Publications 2011

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Publications

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Facilities

Journals

164 publications

PubMed DOI Crossref
Mechanisms underlying the sparing of masticatory versus limb muscle function in an experimental critical illness model.
Aare S, Ochala J, Norman HS, ..., Hoffman EP, Larsson L
Physiol. Genomics 43 (24) 1334-1350 [2011-12-16; online 2011-10-20]
Array and Analysis Facility
PubMed
Association between body mass index and insulin receptor substrate-4 (IRS-4) gene polymorphisms in patients with schizophrenia.
Melkersson K, Persson B
Neuro Endocrinol. Lett. 32 (5) 634-640 [2011-12-15; online 2011-12-15]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Identification of immunogenic proteins in Treponema phagedenis-like strain V1 from digital dermatitis lesions by phage display.
Rosander A, Guss B, Frykberg L, ..., Näslund K, Pringle M
Vet. Microbiol. 153 (3-4) 315-322 [2011-12-15; online 2011-07-19]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.
Huffman JE, Knezevic A, Vitart V, ..., Wright AF, Lauc G
Hum. Mol. Genet. 20 (24) 5000-5011 [2011-12-15; online 2011-09-13]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe.
Steglich B, Filion GJ, van Steensel B, Ekwall K
Nucleus 3 (1) 77-87 [2011-12-14; online 2011-12-14]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Muscle wasting and the temporal gene expression pattern in a novel rat intensive care unit model.
Llano-Diez M, Gustafson AM, Olsson C, Goransson H, Larsson L
pmc
BMC Genomics 12 (-) 602 [2011-12-13; online 2011-12-13]
Array and Analysis Facility
PubMed DOI Crossref
Blood pressure loci identified with a gene-centric array.
Johnson T, Gaunt TR, Newhouse SJ, ..., Caulfield MJ, Munroe PB
pmc
Am. J. Hum. Genet. 89 (6) 688-700 [2011-12-09; online 2011-11-22]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Common variants of the BRCA1 wild-type allele modify the risk of breast cancer in BRCA1 mutation carriers.
Cox DG, Simard J, Sinnett D, ..., Sinilnikova OM, Consortium of Investigators of Modifiers of BRCA1/2
pmc
Hum. Mol. Genet. 20 (23) 4732-4747 [2011-12-01; online 2011-09-06]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Pathway-based analysis of genetic susceptibility to cervical cancer in situ: HLA-DPB1 affects risk in Swedish women.
Ivansson EL, Juko-Pecirep I, Erlich HA, Gyllensten UB
Genes Immun. 12 (8) 605-614 [2011-12-00; online 2011-07-01]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Salt-inducible kinase 1 influences Na(+),K(+)-ATPase activity in vascular smooth muscle cells and associates with variations in blood pressure.
Popov S, Silveira A, Wågsäter D, ..., Melander O, Bertorello AM
J. Hypertens. 29 (12) 2395-2403 [2011-12-00; online 2011-11-03]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
High nuclear RBM3 expression is associated with an improved prognosis in colorectal cancer.
Hjelm B, Brennan DJ, Zendehrokh N, ..., Jirström K, Uhlen M
Proteomics Clin Appl 5 (11-12) 624-635 [2011-12-00; online 2011-10-01]
Tissue Profiling
PubMed DOI Crossref
A complex genomic rearrangement involving the endothelin 3 locus causes dermal hyperpigmentation in the chicken.
Dorshorst B, Molin A, Rubin C, ..., Ashwell C, Andersson L
pmc
PLoS Genet. 7 (12) e1002412 [2011-12-00; online 2011-12-22]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Targeting acetylcholinesterase: identification of chemical leads by high throughput screening, structure determination and molecular modeling.
Berg L, Andersson CD, Artursson E, ..., Linusson A, Ekström F
pmc
PLoS ONE 6 (11) e26039 [2011-11-30; online 2011-11-30]
Chemical Biology Consortium Sweden (CBCS) [Service]
PubMed DOI Crossref
Next-generation sequencing technologies and applications for human genetic history and forensics.
Berglund EC, Kiialainen A, Syvänen AC
pmc
Investig Genet 2 (-) 23 [2011-11-24; online 2011-11-24]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Counting absolute numbers of molecules using unique molecular identifiers.
Kivioja T, Vähärautio A, Karlsson K, ..., Linnarsson S, Taipale J
Nat. Methods 9 (1) 72-74 [2011-11-20; online 2011-11-20]
Karolinska High Throughput Center (KHTC)
PubMed DOI Crossref
Prognostic DNA methylation patterns in cytogenetically normal acute myeloid leukemia are predefined by stem cell chromatin marks.
Deneberg S, Guardiola P, Lennartsson A, ..., Döhner K, Lehmann S
Blood 118 (20) 5573-5582 [2011-11-17; online 2011-10-01]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Variance decomposition of protein profiles from antibody arrays using a longitudinal twin model.
Kato BS, Nicholson G, Neiman M, ..., Spector TD, Schwenk JM
pmc
Proteome Sci 9 (-) 73 [2011-11-17; online 2011-11-17]
Plasma Profiling [Collaborative]
PubMed DOI Crossref
Genome sequencing reveals a phage in Helicobacter pylori.
Lehours P, Vale FF, Bjursell MK, ..., Engstrand L, Andersson AF
pmc GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK
MBio 2 (6) - [2011-11-15; online 2011-11-15]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1.
Bown MJ, Jones GT, Harrison SC, ..., Deloukas P, Samani NJ
pmc
Am. J. Hum. Genet. 89 (5) 619-627 [2011-11-11; online 2011-11-08]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
A lateral flow protein microarray for rapid and sensitive antibody assays.
Gantelius J, Bass T, Sjöberg R, Nilsson P, Andersson-Svahn H
pmc
Int J Mol Sci 12 (11) 7748-7759 [2011-11-09; online 2011-11-09]
PubMed DOI Crossref
Inhibition of proteasome deubiquitinating activity as a new cancer therapy.
D'Arcy P, Brnjic S, Olofsson MH, ..., Larsson R, Linder S
GEO
Nat. Med. 17 (12) 1636-1640 [2011-11-06; online 2011-11-06]
Array and Analysis Facility
PubMed DOI Crossref
Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain.
Ameur A, Zaghlool A, Halvardson J, ..., Cavelier L, Feuk L
Nat. Struct. Mol. Biol. 18 (12) 1435-1440 [2011-11-06; online 2011-11-06]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Plasma profiling reveals human fibulin-1 as candidate marker for renal impairment.
Neiman M, Hedberg JJ, Dönnes PR, ..., Schwenk JM, Nilsson P
J. Proteome Res. 10 (11) 4925-4934 [2011-11-04; online 2011-09-29]
Plasma Profiling [Collaborative]
PubMed DOI Crossref
SWI/SNF regulates the alternative processing of a specific subset of pre-mRNAs in Drosophila melanogaster.
Waldholm J, Wang Z, Brodin D, ..., Farrants AK, Visa N
pmc
BMC Mol. Biol. 12 (-) 46 [2011-11-02; online 2011-11-02]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Abundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum.
Avesson L, Schumacher HT, Fechter P, ..., Hellman U, Söderbom F
RNA Biol 8 (6) 1094-1104 [2011-11-01; online 2011-09-24]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Hypothalamic mitochondrial dysfunction associated with anorexia in the anx/anx mouse.
Lindfors C, Nilsson IA, Garcia-Roves PM, ..., Schalling M, Johansen JE
pmc
Proc. Natl. Acad. Sci. U.S.A. 108 (44) 18108-18113 [2011-11-01; online 2011-10-26]
Fluorescence Tissue Profiling
PubMed DOI Crossref
Targeted enrichment of genomic DNA regions for next-generation sequencing.
Mertes F, Elsharawy A, Sauer S, ..., Lehrach H, Brookes AJ
pmc
Brief Funct Genomics 10 (6) 374-386 [2011-11-00; online 2011-11-26]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Gene copy number aberrations are associated with survival in histologic subgroups of non-small cell lung cancer.
Micke P, Edlund K, Holmberg L, ..., Isaksson A, Botling J
J Thorac Oncol 6 (11) 1833-1840 [2011-11-00; online 2011-10-21]
Array and Analysis Facility
PubMed DOI Crossref
The Human Protein Atlas as a proteomic resource for biomarker discovery.
Pontén F, Schwenk JM, Asplund A, Edqvist PD
J. Intern. Med. 270 (5) 428-446 [2011-11-00; online 2011-07-15]
Plasma Profiling [Technology development] Tissue Profiling
PubMed DOI Crossref
Western blotting via proximity ligation for high performance protein analysis.
Liu Y, Gu J, Hagner-McWhirter Å, ..., Ivansson D, Landegren U
pmc
Mol. Cell Proteomics 10 (11) O111.011031 [2011-11-00; online 2011-08-05]
PLA Proteomics
PubMed DOI Crossref
Generation of monospecific antibodies based on affinity capture of polyclonal antibodies.
Hjelm B, Forsström B, Igel U, ..., Johansson C, Uhlén M
pmc
Protein Sci. 20 (11) 1824-1835 [2011-11-00; online 2011-09-08]
Autoimmunity Profiling [Technology development] Cell Profiling Plasma Profiling [Technology development]
PubMed DOI Crossref
Increasing the dynamic range of in situ PLA.
Clausson C, Allalou A, Weibrecht I, ..., Wählby C, Söderberg O
Nat. Methods 8 (11) 892-893 [2011-10-28; online 2011-10-28]
BioImage Informatics [Collaborative] PLA Proteomics
PubMed DOI Crossref
Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity.
Rasmussen M, Sundström M, Göransson Kultima H, ..., Glimelius B, Isaksson A
pmc
Genome Biol. 12 (10) R108 [2011-10-24; online 2011-10-24]
Array and Analysis Facility
PubMed DOI Crossref
Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.
Chambers JC, Zhang W, Sehmi J, ..., Elliott P, Kooner JS
pmc mid
Nat. Genet. 43 (11) 1131-1138 [2011-10-16; online 2011-10-16]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
MED12, the mediator complex subunit 12 gene, is mutated at high frequency in uterine leiomyomas.
Mäkinen N, Mehine M, Tolvanen J, ..., Vahteristo P, Aaltonen LA
GEO
Science 334 (6053) 252-255 [2011-10-14; online 2011-08-27]
Karolinska High Throughput Center (KHTC)
PubMed DOI Crossref
Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease.
Rivas MA, Beaudoin M, Gardet A, ..., Xavier RJ, Daly MJ
pmc mid
Nat. Genet. 43 (11) 1066-1073 [2011-10-09; online 2011-10-09]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Pseudoceramines A-D, new antibacterial bromotyrosine alkaloids from the marine sponge Pseudoceratina sp.
Yin S, Davis RA, Shelper T, ..., Sundin C, Quinn RJ
Org. Biomol. Chem. 9 (19) 6755-6760 [2011-10-07; online 2011-08-19]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Adenosine kinase deficiency disrupts the methionine cycle and causes hypermethioninemia, encephalopathy, and abnormal liver function.
Bjursell MK, Blom HJ, Cayuela JA, ..., Lundeberg J, Wedell A
pmc
Am. J. Hum. Genet. 89 (4) 507-515 [2011-10-07; online 2011-10-04]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Genetic variation in complement component C3 shows association with ischaemic stroke.
Olsson S, Stokowska A, Holmegaard L, ..., Pekna M, Jern C
Eur. J. Neurol. 18 (10) 1272-1274 [2011-10-00; online 2011-03-19]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans.
Vetukuri RR, Avrova AO, Grenville-Briggs LJ, ..., Whisson SC, Dixelius C
Mol. Plant Pathol. 12 (8) 772-785 [2011-10-00; online 2011-07-06]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
DOI Crossref
Tracking Phytophthora infestans with SSR markers within and between seasons - a field study in Sweden
Widmark AK, Andersson B, Sandström M, Yuen JE
Plant Pathol 60 (5) 938-945 [2011-10-00; online 2011-03-16]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
No evidence for an association between genetic variation at the SERPINI1 locus and ischemic stroke.
Tjärnlund-Wolf A, Olsson S, Jood K, Blomstrand C, Jern C
J. Neurol. 258 (10) 1885-1887 [2011-10-00; online 2011-04-14]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Early transcriptional regulation by C-peptide in freshly isolated rat proximal tubular cells.
Lindahl E, Nordquist L, Müller P, ..., Palm F, Jörnvall H
Diabetes Metab. Res. Rev. 27 (7) 697-704 [2011-10-00; online 2011-05-28]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.
Strawbridge RJ, Dupuis J, Prokopenko I, ..., Hamsten A, Florez JC
pmc
Diabetes 60 (10) 2624-2634 [2011-10-00; online 2011-08-30]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
High-risk HPV infection and CIN grade correlates to the expression of c-myc, CD4+, FHIT, E-cadherin, Ki-67, and p16INK4a.
Samir R, Asplund A, Tot T, Pekar G, Hellberg D
J Low Genit Tract Dis 15 (4) 280-286 [2011-10-00; online 2011-05-12]
Tissue Profiling
PubMed DOI Crossref
Histone modifications influence mediator interactions with chromatin.
Zhu X, Zhang Y, Bjornsdottir G, ..., Gustafsson CM, Myers LC
pmc
Nucleic Acids Res. 39 (19) 8342-8354 [2011-10-00; online 2011-07-12]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
The Lin28/let-7 axis regulates glucose metabolism.
Zhu H, Shyh-Chang N, Segrè AV, ..., Altshuler D, Daley GQ
pmc mid
Cell 147 (1) 81-94 [2011-09-30; online 2011-10-04]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
ProteinSeq: high-performance proteomic analyses by proximity ligation and next generation sequencing.
Darmanis S, Nong RY, Vänelid J, ..., Kamali-Moghaddam M, Landegren U
pmc
PLoS ONE 6 (9) e25583 [2011-09-29; online 2011-09-29]
PLA Proteomics
PubMed DOI Crossref
High RBM3 expression in prostate cancer independently predicts a reduced risk of biochemical recurrence and disease progression.
Jonsson L, Gaber A, Ulmert D, ..., Bjartell A, Jirström K
pmc
Diagn Pathol 6 (-) 91 [2011-09-28; online 2011-09-28]
Tissue Profiling
PubMed DOI Crossref
Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.
Wain LV, Verwoert GC, O'Reilly PF, ..., Elliott P, van Duijn CM
pmc mid
Nat. Genet. 43 (10) 1005-1011 [2011-09-11; online 2011-09-11]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Engineering GST M2-2 for high activity with indene 1,2-oxide and indication of an H-site residue sustaining catalytic promiscuity.
Norrgård MA, Mannervik B
J. Mol. Biol. 412 (1) 111-120 [2011-09-09; online 2011-08-09]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Large-scale protein profiling in human cell lines using antibody-based proteomics.
Fagerberg L, Strömberg S, El-Obeid A, ..., Ponten F, Asplund A
J. Proteome Res. 10 (9) 4066-4075 [2011-09-02; online 2011-07-06]
Tissue Profiling
PubMed DOI Crossref
Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport.
Phirke P, Efimenko E, Mohan S, ..., Leroux MR, Swoboda P
pmc mid
Dev. Biol. 357 (1) 235-247 [2011-09-01; online 2011-07-12]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genomic and clinical characteristics of six patients with partially overlapping interstitial deletions at 10p12p11.
Wentzel C, Rajcan-Separovic E, Ruivenkamp CA, ..., Giurgea I, Thuresson AC
pmc
Eur. J. Hum. Genet. 19 (9) 959-964 [2011-09-00; online 2011-04-28]
Array and Analysis Facility NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Dystrobrevin-binding protein 1 gene (DTNBP1) variants associated with cerebrospinal fluid homovanillic acid and 5-hydroxyindoleacetic acid concentrations in healthy volunteers.
Andreou D, Saetre P, Kähler AK, ..., Terenius L, Jönsson EG
Eur Neuropsychopharmacol 21 (9) 700-704 [2011-09-00; online 2011-02-08]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Variants in STAT5B associate with serum TC and LDL-C levels.
Kornfeld JW, Isaacs A, Vitart V, ..., Pramstaller PP, Hicks AA
J. Clin. Endocrinol. Metab. 96 (9) E1496-E1501 [2011-09-00; online 2011-07-15]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Structural features determining the intestinal epithelial permeability and efflux of novel HIV-1 protease inhibitors.
Lazorova L, Hubatsch I, Ekegren JK, ..., Larhed M, Artursson P
pmc
J Pharm Sci 100 (9) 3763-3772 [2011-09-00; online 2011-04-15]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Large-scale gene-centric analysis identifies novel variants for coronary artery disease.
IBC 50K CAD Consortium N
pmc
PLoS Genet. 7 (9) e1002260 [2011-09-00; online 2011-09-22]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Total zinc intake may modify the glucose-raising effect of a zinc transporter (SLC30A8) variant: a 14-cohort meta-analysis.
Kanoni S, Nettleton JA, Hivert MF, ..., Franks PW, Dedoussis GV
pmc
Diabetes 60 (9) 2407-2416 [2011-09-00; online 2011-08-04]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Combinations of SNPs related to signal transduction in bipolar disorder.
Koefoed P, Andreassen OA, Bennike B, ..., Werge T, Mellerup E
pmc
PLoS ONE 6 (8) e23812 [2011-08-29; online 2011-08-29]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Identification of Bacterial Target Proteins for the Salicylidene Acylhydrazide Class of Virulence-blocking Compounds
Wang D, Zetterström CE, Gabrielsen M, ..., Elofsson M, Roe AJ
J. Biol. Chem. 286 (34) 29922-29931 [2011-08-26; online 2011-07-01]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
Changes in the acetogenic population in a mesophilic anaerobic digester in response to increasing ammonia concentration.
Westerholm M, Müller B, Arthurson V, Schnürer A
GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK
Microbes Environ. 26 (4) 347-353 [2011-08-24; online 2011-08-24]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.
Debette S, Visvikis-Siest S, Chen MH, ..., Vasan RS, Seshadri S
pmc mid
Circ. Res. 109 (5) 554-563 [2011-08-19; online 2011-07-16]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Characterization of a 8q21.11 microdeletion syndrome associated with intellectual disability and a recognizable phenotype.
Palomares M, Delicado A, Mansilla E, ..., Hennekam RC, Lapunzina P
pmc
Am. J. Hum. Genet. 89 (2) 295-301 [2011-08-12; online 2011-08-02]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
International Multiple Sclerosis Genetics Consortium , Wellcome Trust Case Control Consortium 2 , Sawcer S, ..., Donnelly P, Compston A
pmc mid
Nature 476 (7359) 214-219 [2011-08-10; online 2011-08-10]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Functional and prognostic relevance of the homeobox protein MSX2 in malignant melanoma.
Gremel G, Ryan D, Rafferty M, ..., Ponten F, Gallagher WM
pmc
Br. J. Cancer 105 (4) 565-574 [2011-08-09; online 2011-07-07]
Tissue Profiling
PubMed DOI Crossref
Mapping the subcellular protein distribution in three human cell lines.
Fagerberg L, Stadler C, Skogs M, ..., Uhlén M, Lundberg E
J. Proteome Res. 10 (8) 3766-3777 [2011-08-05; online 2011-06-17]
Cell Profiling
PubMed DOI Crossref
Complete genome sequence of Brachyspira intermedia reveals unique genomic features in Brachyspira species and phage-mediated horizontal gene transfer.
Håfström T, Jansson DS, Segerman B
pmc
BMC Genomics 12 (-) 395 [2011-08-04; online 2011-08-04]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
The genetic structure of the Swedish population.
Humphreys K, Grankvist A, Leu M, ..., Palmgren J, Magnusson PK
pmc
PLoS ONE 6 (8) e22547 [2011-08-04; online 2011-08-04]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Influence of the COMT genotype on working memory and brain activity changes during development.
Dumontheil I, Roggeman C, Ziermans T, ..., Kere J, Klingberg T
Biol. Psychiatry 70 (3) 222-229 [2011-08-01; online 2011-04-26]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Evaluation of Fanconi anaemia genes FANCA, FANCC and FANCL in cervical cancer susceptibility.
Juko-Pecirep I, Ivansson EL, Gyllensten UB
Gynecol. Oncol. 122 (2) 377-381 [2011-08-00; online 2011-05-06]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Array-based genomic screening at diagnosis and during follow-up in chronic lymphocytic leukemia.
Gunnarsson R, Mansouri L, Isaksson A, ..., Juliusson G, Rosenquist R
pmc
Haematologica 96 (8) 1161-1169 [2011-08-00; online 2011-05-07]
Array and Analysis Facility NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Lack of association between two dopamine D2 receptor gene polymorphisms and schizophrenia.
Caprini S, Saetre P, Melle I, ..., Terenius L, Jönsson EG
Psychiatr. Genet. 21 (4) 214-215 [2011-08-00; online 2011-06-30]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Gene-environment interactions between CRHR1 variants and physical assault in suicide attempts.
Ben-Efraim YJ, Wasserman D, Wasserman J, Sokolowski M
Genes Brain Behav. 10 (6) 663-672 [2011-08-00; online 2011-05-25]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Hyphae-colonizing Burkholderia sp.--a new source of biological control agents against sheath blight disease (Rhizoctonia solani AG1-IA) in rice.
Cuong ND, Nicolaisen MH, Sørensen J, Olsson S
Microb. Ecol. 62 (2) 425-434 [2011-08-00; online 2011-03-03]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi.
Franzén O, Arner E, Ferella M, ..., Andersson B, Daub CO
pmc
PLoS Negl Trop Dis 5 (8) e1283 [2011-08-00; online 2011-08-30]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Correlation between LRIG1 and LRIG2 expressions and expression of 11 tumor markers, with special reference to tumor suppressors, in CIN and normal cervical epithelium.
Lindström AK, Asplund A, Hellberg D
Gynecol. Oncol. 122 (2) 372-376 [2011-08-00; online 2011-06-03]
Tissue Profiling
PubMed DOI Crossref
Lack of association between genetic variations in the KALRN region and ischemic stroke.
Olsson S, Jood K, Melander O, ..., Lindgren A, Jern C
Clin. Biochem. 44 (12) 1018-1020 [2011-08-00; online 2011-06-15]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Antimicrobial susceptibility of Brachyspira spp. isolated from commercial laying hens and free-living wild mallards (Anas platyrhynchos).
Jansson DS, Pringle M
Avian Pathol. 40 (4) 387-393 [2011-08-00; online 2011-08-05]
NGI Uppsala (Uppsala Genome Center)
PubMed
RBM3-regulated genes promote DNA integrity and affect clinical outcome in epithelial ovarian cancer.
Ehlén Å, Nodin B, Rexhepaj E, ..., Brennan DJ, Jirström K
pmc
Transl Oncol 4 (4) 212-221 [2011-08-00; online 2011-08-01]
Tissue Profiling
PubMed DOI Crossref
Performance of ultra-deep pyrosequencing in analysis of HIV-1 pol gene variation.
Mild M, Hedskog C, Jernberg J, Albert J
pmc
PLoS ONE 6 (7) e22741 [2011-07-25; online 2011-07-25]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing.
Jiao X, Rosenlund M, Hooper SD, ..., Mangion J, Sjöblom T
pmc
PLoS ONE 6 (7) e22250 [2011-07-22; online 2011-07-22]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Low RBM3 protein expression correlates with tumour progression and poor prognosis in malignant melanoma: an analysis of 215 cases from the Malmö Diet and Cancer Study.
Jonsson L, Bergman J, Nodin B, ..., Uhlén M, Jirström K
pmc
J Transl Med 9 (-) 114 [2011-07-21; online 2011-07-21]
Tissue Profiling
PubMed DOI Crossref
The use of genome-wide eQTL associations in lymphoblastoid cell lines to identify novel genetic pathways involved in complex traits.
Min JL, Taylor JM, Richards JB, ..., Spector TD, Zondervan KT
pmc
PLoS ONE 6 (7) e22070 [2011-07-15; online 2011-07-15]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Scalable transcriptome preparation for massive parallel sequencing.
Stranneheim H, Werne B, Sherwood E, Lundeberg J
pmc
PLoS ONE 6 (7) e21910 [2011-07-07; online 2011-07-07]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Identification of noncoding transcripts from within CENP-A chromatin at fission yeast centromeres.
Choi ES, Strålfors A, Castillo AG, ..., Ekwall K, Allshire RC
pmc
J. Biol. Chem. 286 (26) 23600-23607 [2011-07-01; online 2011-05-03]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Potential association of muscarinic receptor 3 gene variants with primary Sjogren's syndrome.
Appel S, Le Hellard S, Bruland O, ..., Wahren-Herlenius M, Jonsson R
Ann. Rheum. Dis. 70 (7) 1327-1329 [2011-07-00; online 2011-04-01]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Species sorting and neutral processes are both important during the initial assembly of bacterial communities.
Langenheder S, Székely AJ
pmc
ISME J 5 (7) 1086-1094 [2011-07-00; online 2011-01-29]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Genetic architecture of circulating lipid levels.
Demirkan A, Amin N, Isaacs A, ..., van Duijn CM, ENGAGE CONSORTIUM
pmc
Eur. J. Hum. Genet. 19 (7) 813-819 [2011-07-00; online 2011-03-30]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
SATB2 in combination with cytokeratin 20 identifies over 95% of all colorectal carcinomas.
Magnusson K, de Wit M, Brennan DJ, ..., Jirström K, Pontén F
Am. J. Surg. Pathol. 35 (7) 937-948 [2011-07-00; online 2011-06-17]
Cell Profiling Tissue Profiling
PubMed DOI Crossref
Concomitant autoimmunity in myasthenia gravis--lack of association with IgA deficiency.
Ramanujam R, Piehl F, Pirskanen R, Gregersen PK, Hammarström L
pmc mid
J. Neuroimmunol. 236 (1-2) 118-122 [2011-07-00; online 2011-06-15]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Replication and explorations of high-order epistasis using a large advanced intercross line pedigree.
Pettersson M, Besnier F, Siegel PB, Carlborg O
pmc
PLoS Genet. 7 (7) e1002180 [2011-07-00; online 2011-07-21]
NGI Uppsala (SNP&SEQ Technology Platform) [Service]
PubMed DOI Crossref
Prostasomal DNA characterization and transfer into human sperm.
Ronquist GK, Larsson A, Ronquist G, ..., Carlsson L, Stavreus-Evers A
Mol. Reprod. Dev. 78 (7) 467-476 [2011-07-00; online 2011-06-04]
Array and Analysis Facility
PubMed DOI Crossref
Genome wide association study identifies KCNMA1 contributing to human obesity.
Jiao H, Arner P, Hoffstedt J, ..., Clement K, Dahlman I
pmc
BMC Med Genomics 4 (-) 51 [2011-06-28; online 2011-06-28]
Bioinformatics and Expression Analysis (BEA) Mutation Analysis Facility (MAF) NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.
Kilpeläinen TO, Zillikens MC, Stančákova A, ..., Laakso M, Loos RJ
pmc mid
Nat. Genet. 43 (8) 753-760 [2011-06-26; online 2011-06-26]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Specific syndecan-1 domains regulate mesenchymal tumor cell adhesion, motility and migration.
Zong F, Fthenou E, Mundt F, ..., Hjerpe A, Dobra K
pmc
PLoS ONE 6 (6) e14816 [2011-06-23; online 2011-06-23]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
KIT pathway alterations in mucosal melanomas of the vulva and other sites.
Omholt K, Grafström E, Kanter-Lewensohn L, Hansson J, Ragnarsson-Olding BK
Clin. Cancer Res. 17 (12) 3933-3942 [2011-06-15; online 2011-06-18]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Translational database selection and multiplexed sequence capture for up front filtering of reliable breast cancer biomarker candidates.
Ståhl PL, Bjursell MK, Mahdessian H, ..., Jirström K, Lundeberg J
pmc
PLoS ONE 6 (6) e20794 [2011-06-15; online 2011-06-15]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
(R,S)-dichlorprop herbicide in agricultural soil induces proliferation and expression of multiple dioxygenase-encoding genes in the indigenous microbial community.
Paulin MM, Nicolaisen MH, Sørensen J
GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK
Environ. Microbiol. 13 (6) 1513-1523 [2011-06-00; online 2011-03-23]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Genetic association and gene expression analysis identify FGFR1 as a new susceptibility gene for human obesity.
Jiao H, Arner P, Dickson SL, ..., Clement K, Dahlman I
J. Clin. Endocrinol. Metab. 96 (6) E962-E966 [2011-06-00; online 2011-03-25]
Bioinformatics and Expression Analysis (BEA) Mutation Analysis Facility (MAF) NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
The fat mass and obesity gene is linked to reduced verbal fluency in overweight and obese elderly men.
Benedict C, Jacobsson JA, Rönnemaa E, ..., Kilander L, Schiöth HB
Neurobiol. Aging 32 (6) 1159.e1-1159.e5 [2011-06-00; online 2011-04-05]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Cytochrome P450 1A, 1B, and 1C mRNA induction patterns in three-spined stickleback exposed to a transient and a persistent inducer.
Gao K, Brandt I, Goldstone JV, Jönsson ME
pmc mid
Comp. Biochem. Physiol. C Toxicol. Pharmacol. 154 (1) 42-55 [2011-06-00; online 2011-03-01]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Feather pecking behavior in laying hens: hypothalamic gene expression in birds performing and receiving pecks.
Brunberg E, Jensen P, Isaksson A, Keeling L
Poult. Sci. 90 (6) 1145-1152 [2011-06-00; online 2011-05-21]
Array and Analysis Facility
PubMed DOI Crossref
Co-occurring SHOC2 and PTPN11 mutations in a patient with severe/complex Noonan syndrome-like phenotype.
Ekvall S, Hagenäs L, Allanson J, Annerén G, Bondeson ML
Am. J. Med. Genet. A 155A (6) 1217-1224 [2011-06-00; online 2011-05-07]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Tepidanaerobacter acetatoxydans sp. nov., an anaerobic, syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes.
Westerholm M, Roos S, Schnürer A
GENBANK GENBANK GENBANK GENBANK
Syst. Appl. Microbiol. 34 (4) 260-266 [2011-06-00; online 2011-04-19]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Detailed analysis of variants in FTO in association with body composition in a cohort of 70-year-olds suggests a weakened effect among elderly.
Jacobsson JA, Almén MS, Benedict C, ..., Lind L, Schiöth HB
pmc
PLoS ONE 6 (5) e20158 [2011-05-27; online 2011-05-27]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Multiple recognition assay reveals prostasomes as promising plasma biomarkers for prostate cancer.
Tavoosidana G, Ronquist G, Darmanis S, ..., Landegren UD, Kamali-Moghaddam M
pmc
Proc. Natl. Acad. Sci. U.S.A. 108 (21) 8809-8814 [2011-05-24; online 2011-05-11]
Clinical Biomarkers PLA Proteomics
PubMed DOI Crossref
Sequence and generation of mature ribosomal RNA transcripts in Dictyostelium discoideum.
Boesler C, Kruse J, Söderbom F, Hammann C
pmc GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK GENBANK
J. Biol. Chem. 286 (20) 17693-17703 [2011-05-20; online 2011-04-02]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
A roadmap to generate renewable protein binders to the human proteome.
Colwill K, Renewable Protein Binder Working Group , Gräslund S
Nat. Methods 8 (7) 551-558 [2011-05-15; online 2011-05-15]
Autoimmunity Profiling [Technology development] Plasma Profiling [Technology development]
PubMed DOI Crossref
Cardio-facio-cutaneous syndrome: does genotype predict phenotype?
Allanson JE, Annerén G, Aoki Y, ..., Verloes A, Zenker M
pmc mid
Am J Med Genet C Semin Med Genet 157C (2) 129-135 [2011-05-15; online 2011-04-16]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Experimental evidence supports a sex-specific selective sieve in mitochondrial genome evolution.
Innocenti P, Morrow EH, Dowling DK
GEO
Science 332 (6031) 845-848 [2011-05-13; online 2011-05-14]
Array and Analysis Facility
PubMed DOI Crossref
Cys-X scanning for expansion of active-site residues and modulation of catalytic functions in a glutathione transferase.
Norrgård MA, Hellman U, Mannervik B
pmc
J. Biol. Chem. 286 (19) 16871-16878 [2011-05-13; online 2011-04-02]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Methods for Analysis of Transcription Factor DNA-Binding Specificity In Vitro.
Jolma A, Taipale J
Subcell. Biochem. 52 (-) 155-173 [2011-05-11; online 2011-05-11]
Karolinska High Throughput Center (KHTC)
PubMed DOI Crossref
Growth differentiation factor 15: a prognostic marker for recurrence in colorectal cancer.
Wallin U, Glimelius B, Jirström K, ..., Påhlman L, Birgisson H
pmc
Br. J. Cancer 104 (10) 1619-1627 [2011-05-10; online 2011-04-07]
Tissue Profiling
PubMed DOI Crossref
Melanoma cells produce multiple laminin isoforms and strongly migrate on α5 laminin(s) via several integrin receptors.
Oikawa Y, Hansson J, Sasaki T, ..., Tryggvason K, Patarroyo M
Exp. Cell Res. 317 (8) 1119-1133 [2011-05-01; online 2011-01-05]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Characterization of NPY Y2 receptor protein expression in the mouse brain. II. Coexistence with NPY, the Y1 receptor, and other neurotransmitter-related molecules.
Stanić D, Mulder J, Watanabe M, Hökfelt T
J. Comp. Neurol. 519 (7) 1219-1257 [2011-05-01; online 2011-04-01]
Fluorescence Tissue Profiling
PubMed DOI Crossref
Directional genetic selection by pulp mill effluent on multiple natural populations of three-spined stickleback (Gasterosteus aculeatus).
Lind EE, Grahn M
pmc
Ecotoxicology 20 (3) 503-512 [2011-05-00; online 2011-04-02]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
The 12q14 microdeletion syndrome: six new cases confirming the role of HMGA2 in growth.
Lynch SA, Foulds N, Thuresson AC, ..., Ennis S, Sharkey F
pmc
Eur. J. Hum. Genet. 19 (5) 534-539 [2011-05-00; online 2011-01-27]
Array and Analysis Facility NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Parental criticism and externalizing behavior problems in adolescents: the role of environment and genotype-environment correlation.
Narusyte J, Neiderhiser JM, Andershed AK, ..., Ganiban J, Lichtenstein P
pmc mid
J Abnorm Psychol 120 (2) 365-376 [2011-05-00; online 2011-02-02]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria.
Farnelid H, Andersson AF, Bertilsson S, ..., Hagström Å, Riemann L
pmc
PLoS ONE 6 (4) e19223 [2011-04-29; online 2011-04-29]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Large scale library generation for high throughput sequencing.
Borgström E, Lundin S, Lundeberg J
pmc
PLoS ONE 6 (4) e19119 [2011-04-27; online 2011-04-27]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods.
Jakobsen L, Vanselow K, Skogs M, ..., Hyman AA, Andersen JS
pmc
EMBO J. 30 (8) 1520-1535 [2011-04-20; online 2011-03-15]
Cell Profiling
PubMed DOI Crossref
Structure and assembly-disassembly properties of wild-type transthyretin amyloid protofibrils observed with atomic force microscopy.
Pires RH, Saraiva MJ, Damas AM, Kellermayer MS
J. Mol. Recognit. 24 (3) 467-476 [2011-04-20; online 2011-04-20]
Mass Spectrometry-based Proteomics, Uppsala
PubMed DOI Crossref
Clostridium botulinum group III: a group with dual identity shaped by plasmids, phages and mobile elements.
Skarin H, Håfström T, Westerberg J, Segerman B
pmc
BMC Genomics 12 (-) 185 [2011-04-12; online 2011-04-12]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Synthesis and application of a bromomethyl substituted scaffold to be used for efficient optimization of anti-virulence activity.
Chorell E, Bengtsson C, Sainte-Luce Banchelin T, ..., Hultgren SJ, Almqvist F
pmc mid
Eur J Med Chem 46 (4) 1103-1116 [2011-04-00; online 2011-02-15]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
A candidate gene study of the type I interferon pathway implicates IKBKE and IL8 as risk loci for SLE.
Sandling JK, Garnier S, Sigurdsson S, ..., Rönnblom L, Syvänen AC
pmc
Eur. J. Hum. Genet. 19 (4) 479-484 [2011-04-00; online 2010-12-24]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Kynurenine 3-monooxygenase (KMO) polymorphisms in schizophrenia: an association study.
Holtze M, Saetre P, Erhardt S, ..., Jönsson EG, Schalling M
Schizophr. Res. 127 (1-3) 270-272 [2011-04-00; online 2010-10-30]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Utilizing twins concordance rates to infer the predisposition to myasthenia gravis.
Ramanujam R, Pirskanen R, Ramanujam S, Hammarström L
Twin Res Hum Genet 14 (2) 129-136 [2011-04-00; online 2011-03-24]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
FATP4 missense and nonsense mutations cause similar features in Ichthyosis Prematurity Syndrome.
Sobol M, Dahl N, Klar J
pmc
BMC Res Notes 4 (-) 90 [2011-03-30; online 2011-03-30]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Human oral, gut, and plaque microbiota in patients with atherosclerosis.
Koren O, Spor A, Felin J, ..., Ley RE, Bäckhed F
pmc
Proc. Natl. Acad. Sci. U.S.A. 108 Suppl 1 (-) 4592-4598 [2011-03-15; online 2010-10-13]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Molecular characterization of acquired tolerance of tumor cells to picropodophyllin (PPP).
Hashemi J, Worrall C, Vasilcanu D, ..., Larsson O, Larsson C
pmc
PLoS ONE 6 (3) e14757 [2011-03-14; online 2011-03-14]
Mutation Analysis Facility (MAF)
PubMed
An assessment of CETP sequence variation in relation to cognitive decline and dementia risk.
Reynolds CA, Gatz M, Pedersen NL, Prince JA
pmc
Int J Mol Epidemiol Genet 2 (2) 122-129 [2011-03-10; online 2011-03-10]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Decoding a substantial set of samples in parallel by massive sequencing.
Neiman M, Lundin S, Savolainen P, Ahmadian A
pmc
PLoS ONE 6 (3) e17785 [2011-03-09; online 2011-03-09]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.
Coronary Artery Disease (C4D) Genetics Consortium
Nat. Genet. 43 (4) 339-344 [2011-03-06; online 2011-03-06]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Antibody suspension bead arrays.
Schwenk JM, Nilsson P
Methods Mol. Biol. 723 (-) 29-36 [2011-03-04; online 2011-03-04]
Plasma Profiling [Technology development]
PubMed DOI Crossref
Bioinformatic tools for using whole genome sequencing as a rapid high resolution diagnostic typing tool when tracing bioterror organisms in the food and feed chain.
Segerman B, De Medici D, Ehling Schulz M, ..., Van Rotterdam B, Knutsson R
Int. J. Food Microbiol. 145 Suppl 1 (-) S167-S176 [2011-03-01; online 2010-09-10]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Association of EBF1, FAM167A(C8orf13)-BLK and TNFSF4 gene variants with primary Sjögren's syndrome.
Nordmark G, Kristjansdottir G, Theander E, ..., Jonsson R, Syvänen AC
Genes Immun. 12 (2) 100-109 [2011-03-00; online 2010-09-24]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Ultra-deep sequencing of mouse mitochondrial DNA: mutational patterns and their origins.
Ameur A, Stewart JB, Freyer C, ..., Larsson N, Gyllensten U
pmc
PLoS Genet. 7 (3) e1002028 [2011-03-00; online 2011-03-24]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
CUBN is a gene locus for albuminuria.
Böger CA, Chen MH, Tin A, ..., Fox CS, Kao WH
pmc
J. Am. Soc. Nephrol. 22 (3) 555-570 [2011-03-00; online 2011-03-01]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs.
Olsson M, Meadows JRS, Truvé K, ..., Tintle L, Lindblad-Toh K
pmc
PLoS Genet. 7 (3) e1001332 [2011-03-00; online 2011-03-17]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Genome-wide association analysis identifies variants associated with nonalcoholic fatty liver disease that have distinct effects on metabolic traits.
Speliotes EK, Yerges-Armstrong LM, Wu J, ..., Borecki IB, GOLD Consortium
pmc
PLoS Genet. 7 (3) e1001324 [2011-03-00; online 2011-03-10]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Systematic antibody and antigen-based proteomic profiling with microarrays.
Ayoglu B, Häggmark A, Neiman M, ..., Schwenk JM, Nilsson P
Expert Rev. Mol. Diagn. 11 (2) 219-234 [2011-03-00; online 2011-03-17]
Autoimmunity Profiling [Technology development] Plasma Profiling [Technology development]
PubMed DOI Crossref
Expression of 5,8-LDS of Aspergillus fumigatus and its dioxygenase domain. A comparison with 7,8-LDS, 10-dioxygenase, and cyclooxygenase.
Hoffmann I, Jernerén F, Garscha U, Oliw EH
Arch. Biochem. Biophys. 506 (2) 216-222 [2011-02-15; online 2010-12-07]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma.
Carén H, Djos A, Nethander M, ..., Nilsson S, Martinsson T
pmc
BMC Cancer 11 (-) 66 [2011-02-11; online 2011-02-11]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Performance of microarray and liquid based capture methods for target enrichment for massively parallel sequencing and SNP discovery.
Kiialainen A, Karlberg O, Ahlford A, ..., Lindblad-Toh K, Syvänen AC
pmc
PLoS ONE 6 (2) e16486 [2011-02-09; online 2011-02-09]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Genetic association of sequence variants near AGER/NOTCH4 and dementia.
Bennet AM, Reynolds CA, Eriksson UK, ..., Pedersen NL, Prince JA
pmc mid
J. Alzheimers Dis. 24 (3) 475-484 [2011-02-08; online 2011-02-08]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Diagnostic biomarkers of prostate cancer.
Häggarth L, Hägglöf C, Jaraj SJ, ..., Ostman A, Egevad L
Scand. J. Urol. Nephrol. 45 (1) 60-67 [2011-02-00; online 2010-11-03]
Tissue Profiling
PubMed DOI Crossref
The Swedish new variant of Chlamydia trachomatis.
Unemo M, Clarke IN
Curr. Opin. Infect. Dis. 24 (1) 62-69 [2011-02-00; online 2010-12-16]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
GAD1 is a biomarker for benign and malignant prostatic tissue.
Jaraj SJ, Augsten M, Häggarth L, ..., Ostman A, Egevad L
Scand. J. Urol. Nephrol. 45 (1) 39-45 [2011-02-00; online 2010-11-26]
Tissue Profiling
PubMed DOI Crossref
Sun-induced nonsynonymous p53 mutations are extensively accumulated and tolerated in normal appearing human skin.
Ståhl PL, Stranneheim H, Asplund A, ..., Pontén F, Lundeberg J
J. Invest. Dermatol. 131 (2) 504-508 [2011-02-00; online 2010-10-15]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Common pathogenetic mechanism involving human chromosome 18 in familial and sporadic ileal carcinoid tumors.
Cunningham JL, Díaz de Ståhl T, Sjöblom T, ..., Dumanski JP, Janson ET
Genes Chromosomes Cancer 50 (2) 82-94 [2011-02-00; online 2010-11-26]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Reactive astrocytes and Wnt/β-catenin signaling link nigrostriatal injury to repair in 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine model of Parkinson's disease.
L'Episcopo F, Tirolo C, Testa N, ..., Pluchino S, Marchetti B
pmc mid
Neurobiol. Dis. 41 (2) 508-527 [2011-02-00; online 2010-11-09]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
High-resolution genomic screening in mantle cell lymphoma--specific changes correlate with genomic complexity, the proliferation signature and survival.
Halldórsdóttir AM, Sander B, Göransson H, ..., Rosenquist R, Ehrencrona H
Genes Chromosomes Cancer 50 (2) 113-121 [2011-02-00; online 2010-12-01]
Array and Analysis Facility NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production)
PubMed DOI Crossref
Genetic variation on chromosome 9p21 shows association with the ischaemic stroke subtype large-vessel disease in a Swedish sample aged ≤ 70.
Olsson S, Jood K, Blomstrand C, Jern C
Eur. J. Neurol. 18 (2) 365-367 [2011-02-00; online 2010-05-27]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
Tumor-specific HMG-CoA reductase expression in primary premenopausal breast cancer predicts response to tamoxifen.
Brennan DJ, Laursen H, O'Connor DP, ..., Rydén L, Jirström K
pmc
Breast Cancer Res. 13 (1) R12 [2011-01-31; online 2011-01-31]
Tissue Profiling
PubMed DOI Crossref
HRG inhibits tumor growth and metastasis by inducing macrophage polarization and vessel normalization through downregulation of PlGF.
Rolny C, Mazzone M, Tugues S, ..., Claesson-Welsh L, Carmeliet P
Cancer Cell 19 (1) 31-44 [2011-01-18; online 2011-01-11]
Tissue Profiling
PubMed DOI Crossref
Fine mapping and replication of QTL in outbred chicken advanced intercross lines.
Besnier F, Wahlberg P, Rönnegård L, ..., Siegel PB, Carlborg O
pmc
Genet. Sel. Evol. 43 (1) 3 [2011-01-17; online 2011-01-17]
NGI Uppsala (SNP&SEQ Technology Platform)
PubMed DOI Crossref
New CYP1 genes in the frog Xenopus (Silurana) tropicalis: induction patterns and effects of AHR agonists during development.
Jönsson ME, Berg C, Goldstone JV, Stegeman JJ
pmc mid
Toxicol. Appl. Pharmacol. 250 (2) 170-183 [2011-01-15; online 2010-10-23]
NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation.
Street NR, Jansson S, Hvidsten TR
pmc
BMC Plant Biol. 11 (-) 13 [2011-01-13; online 2011-01-13]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Vitamin D receptor genotypes, ultraviolet radiation exposure, and risk of non-Hodgkin lymphoma.
Smedby KE, Eloranta S, Duvefelt K, ..., Hjalgrim H, Chang ET
Am. J. Epidemiol. 173 (1) 48-54 [2011-01-01; online 2010-11-16]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Mechanisms of blast induced brain injuries, experimental studies in rats.
Risling M, Plantman S, Angeria M, ..., Arborelius U, Davidsson J
Neuroimage 54 Suppl 1 (-) S89-S97 [2011-01-00; online 2010-05-25]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Targeted resequencing of candidate genes using selector probes.
Johansson H, Isaksson M, Sörqvist EF, ..., Ericsson O, Nilsson M
pmc
Nucleic Acids Res. 39 (2) e8 [2011-01-00; online 2010-11-10]
Array and Analysis Facility NGI Uppsala (Uppsala Genome Center)
PubMed DOI Crossref
Structure and etiology of co-occurring internalizing and externalizing disorders in adolescents.
Cosgrove VE, Rhee SH, Gelhorn HL, ..., Young SE, Hewitt JK
pmc mid
J Abnorm Child Psychol 39 (1) 109-123 [2011-01-00; online 2010-08-05]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Meta-analysis of the association between variants in SORL1 and Alzheimer disease.
Reitz C, Cheng R, Rogaeva E, ..., Mayeux R, Genetic and Environmental Risk in Alzheimer Disease 1 Consortium
pmc mid
Arch. Neurol. 68 (1) 99-106 [2011-01-00; online 2011-01-12]
NGI Uppsala (SNP&SEQ Technology Platform)
Software 3.2.14