Publications 2010

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Publications

2021 (82)

2020 (593)

2019 (729)

2018 (643)

2017 (697)

2016 (660)

2015 (427)

2014 (376)

2013 (320)

2012 (243)

2011 (163)

2010 (139)

All (5072)


Infrastructure Units

Journals

139 publications

PubMed DOI Crossref
Tryptophan hydroxylase gene 1 (TPH1) variants associated with cerebrospinal fluid 5-hydroxyindole acetic acid and homovanillic acid concentrations in healthy volunteers.
Andreou D, Saetre P, Werge T, ..., Terenius L, Jönsson EG
pii: S0165-1781(09)00434-X
Psychiatry Res 180 (2-3) 63-67 [2010-12-30; online 2010-06-29]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Defining the transcriptome and proteome in three functionally different human cell lines.
Lundberg E, Fagerberg L, Klevebring D, ..., Mann M, Uhlen M
pii: msb2010106 pmc: PMC3018165 BioProject: PRJNA79633 SRA: SRP002338
Mol. Syst. Biol. 6 (-) 450 [2010-12-21; online 2010-12-24]
Cell Profiling NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Unbalanced translocation 9;16 in two children with dysmorphic features, and severe developmental delay: Evidence of cross-over within derivative chromosome 9 in patient #1.
Zambrano RM, Wohler E, Annerén G, ..., Cutting GR, Batista DA
pii: S1769-7212(10)00140-0
Eur J Med Genet 54 (2) 189-193 [2010-12-07; online 2010-12-07]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Analysis of transcript and protein overlap in a human osteosarcoma cell line.
Klevebring D, Fagerberg L, Lundberg E, ..., Uhlén M, Lundeberg J
pii: 1471-2164-11-684 pmc: PMC3014981 BioProject: PRJNA79747 SRA: SRP003405
BMC Genomics 11 (-) 684 [2010-12-02; online 2010-12-02]
Cell Profiling NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Associations of gene sequence variation and serum levels of C-reactive protein and interleukin-6 with Alzheimer's disease and dementia.
Eriksson UK, Pedersen NL, Reynolds CA, ..., Dickman PW, Bennet AM
pii: Q44555P141331367 pmc: PMC3237048 mid: NIHMS342086
J. Alzheimers Dis. 23 (2) 361-369 [2010-12-01; online 2010-12-01]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Common variants at 10 genomic loci influence hemoglobin A₁(C) levels via glycemic and nonglycemic pathways.
Soranzo N, Sanna S, Wheeler E, ..., Barroso I, Meigs JB
pii: db10-0502 pmc: PMC2992787
Diabetes 59 (12) 3229-3239 [2010-12-00; online 2010-09-21]
NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes.
Willing BP, Dicksved J, Halfvarson J, ..., Jansson JK, Engstrand L
pii: S0016-5085(10)01299-0
Gastroenterology 139 (6) 1844-1854.e1 [2010-12-00; online 2010-09-08]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Distinct gene expression profiles in subsets of chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B-cell receptors.
Marincevic M, Mansouri M, Kanduri M, ..., Stamatopoulos K, Rosenquist R
pii: haematol.2010.028639 pmc: PMC2995565
Haematologica 95 (12) 2072-2079 [2010-12-00; online 2010-08-31]
Array and Analysis Facility NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
SOX10 expression in superficial spreading and nodular malignant melanomas.
Agnarsdóttir M, Sooman L, Bolander A, ..., Uhlen M, Hedstrand H
Melanoma Res. 20 (6) 468-478 [2010-12-00; online 2010-10-05]
Tissue Profiling
PubMed DOI Crossref
The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage.
Wright D, Rubin CJ, Martinez Barrio A, ..., Jensen P, Andersson L
Mol. Ecol. 19 (23) 5140-5156 [2010-12-00; online 2010-11-03]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
High frequency of p16(INK4A) promoter methylation in NRAS-mutated cutaneous melanoma.
Jonsson A, Tuominen R, Grafström E, Hansson J, Egyhazi S
pii: S0022-202X(15)34650-9
J. Invest. Dermatol. 130 (12) 2809-2817 [2010-12-00; online 2010-08-13]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Interactions of dietary whole-grain intake with fasting glucose- and insulin-related genetic loci in individuals of European descent: a meta-analysis of 14 cohort studies.
Nettleton JA, McKeown NM, Kanoni S, ..., Franks PW, Meigs JB
pii: dc10-1150 pmc: PMC2992213
Diabetes Care 33 (12) 2684-2691 [2010-12-00; online 2010-08-10]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
A high-density scan of the Z chromosome in Ficedula flycatchers reveals candidate loci for diversifying selection.
Backström N, Lindell J, Zhang Y, ..., Saetre GP, Ellegren H
pii: EVO1082
Evolution 64 (12) 3461-3475 [2010-12-00; online 2010-07-16]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
SNPs in genes coding for ROS metabolism and signalling in association with docetaxel clearance.
Edvardsen H, Brunsvig PF, Solvang H, ..., Aamdal S, Kristensen VN
pii: tpj20106
Pharmacogenomics J. 10 (6) 513-523 [2010-12-00; online 2010-02-17]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
Elks CE, Perry JR, Sulem P, ..., Ong KK, Murray A
pii: ng.714 pmc: PMC3140055 mid: NIHMS306020
Nat. Genet. 42 (12) 1077-1085 [2010-12-00; online 2010-11-26]
NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Towards a knowledge-based Human Protein Atlas.
Uhlen M, Oksvold P, Fagerberg L, ..., Björling L, Ponten F
pii: nbt1210-1248
Nat. Biotechnol. 28 (12) 1248-1250 [2010-12-00; online 2010-12-09]
Autoimmunity and Serology Profiling [Technology development] Cell Profiling
PubMed DOI Crossref
The obesity related gene, FTO, interacts with APOE, and is associated with Alzheimer's disease risk: a prospective cohort study.
Keller L, Xu W, Wang HX, ..., Fratiglioni L, Graff C
pii: K2785TXG42873L62
J. Alzheimers Dis. 23 (3) 461-469 [2010-11-26; online 2010-11-26]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools.
Marklund S, Carlborg O
pii: 1471-2164-11-665 pmc: PMC3091782
BMC Genomics 11 (-) 665 [2010-11-25; online 2010-11-25]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Gene expression profiling and chromatin immunoprecipitation identify DBN1, SETMAR and HIG2 as direct targets of SOX11 in mantle cell lymphoma.
Wang X, Björklund S, Wasik AM, ..., Christensson B, Sander B
pmc: PMC2989913
PLoS ONE 5 (11) e14085 [2010-11-22; online 2010-11-22]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.
Heid IM, Jackson AU, Randall JC, ..., Mohlke KL, Lindgren CM
pii: ng.685 pmc: PMC3000924 mid: UKMS33585
Nat. Genet. 42 (11) 949-960 [2010-11-00; online 2010-10-12]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Meiofauna reduces bacterial mineralization of naphthalene in marine sediment.
Näslund J, Nascimento FJ, Gunnarsson JS
pii: ismej201063 GENBANK: FN555293 GENBANK: FN555294 GENBANK: FN555295 GENBANK: FN555296 GENBANK: FN555297 GENBANK: FN555298 GENBANK: FN555299 GENBANK: FN555300 GENBANK: FN641887 GENBANK: FN641888 GENBANK: FN641889
ISME J 4 (11) 1421-1430 [2010-11-00; online 2010-05-14]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Creation of an antibody-based subcellular protein atlas.
Lundberg E, Uhlén M
Proteomics 10 (22) 3984-3996 [2010-11-00; online 2010-07-22]
Cell Profiling
PubMed DOI Crossref
Toward next generation plasma profiling via heat-induced epitope retrieval and array-based assays.
Schwenk JM, Igel U, Neiman M, ..., Nilsson P, Uhlen M
pii: M110.001560 pmc: PMC2984230
Mol. Cell Proteomics 9 (11) 2497-2507 [2010-11-00; online 2010-08-05]
Translational Plasma Profiling [Technology development]
PubMed DOI Crossref
Common variants in the ATP2B1 gene are associated with susceptibility to hypertension: the Japanese Millennium Genome Project.
Tabara Y, Kohara K, Kita Y, ..., Ueshima H, Miki T
pii: HYPERTENSIONAHA.110.153429 pmc: PMC5003412 mid: NIHMS810751
Hypertension 56 (5) 973-980 [2010-11-00; online 2010-10-06]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.
Ikram MK, Sim X, Xueling S, ..., Vingerling JR, Wong TY
pmc: PMC2965750
PLoS Genet. 6 (10) e1001184 [2010-10-28; online 2010-10-28]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Association analysis of PALB2 and BRCA2 in bipolar disorder and schizophrenia in a scandinavian case-control sample.
Tesli M, Athanasiu L, Mattingsdal M, ..., Djurovic S, Andreassen OA
Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (7) 1276-1282 [2010-10-05; online 2010-09-28]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Sensitive detection of Aβ protofibrils by proximity ligation--relevance for Alzheimer's disease.
Kamali-Moghaddam M, Pettersson FE, Wu D, ..., Lannfelt L, Landegren U
pii: 1471-2202-11-124 pmc: PMC2959092
BMC Neurosci 11 (-) 124 [2010-10-05; online 2010-10-05]
PLA and Single Cell Proteomics
PubMed DOI Crossref
An exploratory model for G x E interaction on hippocampal volume in schizophrenia; obstetric complications and hypoxia-related genes.
Haukvik UK, Saetre P, McNeil T, ..., Jönsson EG, Agartz I
pii: S0278-5846(10)00249-6
Prog. Neuropsychopharmacol. Biol. Psychiatry 34 (7) 1259-1265 [2010-10-01; online 2010-07-20]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Brain gene expression in relation to fearfulness in female red junglefowl (Gallus gallus).
Jöngren M, Westander J, Nätt D, Jensen P
pii: GBB612
Genes Brain Behav. 9 (7) 751-758 [2010-10-00; online 2010-07-06]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Somatic mosaicism for chromosome X and Y aneuploidies in monozygotic twins heterozygous for sickle cell disease mutation.
Razzaghian HR, Shahi MH, Forsberg LA, ..., Westerman MP, Dumanski JP
Am. J. Med. Genet. A 152A (10) 2595-2598 [2010-10-00; online 2010-08-25]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
DOI Crossref
Lycosid spiders and alternative food: Feeding behavior and implications for biological control
Kuusk AK, Ekbom B
Biological Control 55 (1) 20-26 [2010-10-00; online 2010-10-00]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Linkage to 20p13 including the ANGPT4 gene in families with mixed Alzheimer's disease and vascular dementia.
Sillén A, Brohede J, Lilius L, ..., Winblad B, Graff C
pii: jhg201079
J. Hum. Genet. 55 (10) 649-655 [2010-10-00; online 2010-07-03]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
A chromatin-remodeling protein is a component of fission yeast mediator.
Khorosjutina O, Wanrooij PH, Walfridsson J, ..., Ekwall K, Gustafsson CM
pii: M110.153858 pmc: PMC2943280
J. Biol. Chem. 285 (39) 29729-29737 [2010-09-24; online 2010-07-14]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk.
Heinig M, Petretto E, Wallace C, ..., Hubner N, Cook SA
pii: nature09386 pmc: PMC3657719 mid: EMS49281
Nature 467 (7314) 460-464 [2010-09-23; online 2010-09-10]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Pleiotropy in the presence of allelic heterogeneity: alternative genetic models for the influence of APOE on serum LDL, CSF amyloid-β42, and dementia.
Bennet AM, Reynolds CA, Gatz M, ..., Pedersen NL, Prince JA
pii: 8053337K12207242 pmc: PMC3547982 mid: NIHMS404207
J. Alzheimers Dis. 22 (1) 129-134 [2010-09-18; online 2010-09-18]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Trisomy and triploidy are sources of embryo mortality in the zebra finch.
Forstmeier W, Ellegren H
pii: rspb.2010.0394 pmc: PMC2982043
Proc. Biol. Sci. 277 (1694) 2655-2660 [2010-09-07; online 2010-05-07]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.
Ferreira RC, Pan-Hammarström Q, Graham RR, ..., Behrens TW, Hammarström L
pii: ng.644
Nat. Genet. 42 (9) 777-780 [2010-09-00; online 2010-08-10]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Profiling protein expression and interactions: proximity ligation as a tool for personalized medicine.
Blokzijl A, Friedman M, Pontén F, Landegren U
pii: JIM2256
J. Intern. Med. 268 (3) 232-245 [2010-09-00; online 2010-08-11]
PLA and Single Cell Proteomics
PubMed DOI Crossref
Small-molecule screening using a whole-cell viral replication reporter gene assay identifies 2-{[2-(benzoylamino)benzoyl]amino}-benzoic acid as a novel antiadenoviral compound.
Andersson EK, Strand M, Edlund K, ..., Mei Y, Wadell G
pii: AAC.00203-10 pmc: PMC2935025
Antimicrob. Agents Chemother. 54 (9) 3871-3877 [2010-09-00; online 2010-06-30]
Chemical Biology Consortium Sweden (CBCS) [Collaborative]
PubMed DOI Crossref
High-density screening reveals a different spectrum of genomic aberrations in chronic lymphocytic leukemia patients with 'stereotyped' IGHV3-21 and IGHV4-34 B-cell receptors.
Marincevic M, Cahill N, Gunnarsson R, ..., Stamatopoulos K, Rosenquist R
pii: haematol.2009.021014 pmc: PMC2930953
Haematologica 95 (9) 1519-1525 [2010-09-00; online 2010-04-28]
Array and Analysis Facility
PubMed DOI Crossref
Production of ectomycorrhizal mycelium peaks during canopy closure in Norway spruce forests.
Wallander H, Johansson U, Sterkenburg E, Brandström Durling M, Lindahl BD
pii: NPH3324
New Phytol. 187 (4) 1124-1134 [2010-09-00; online 2010-06-22]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Expression of the RNA-binding protein RBM3 is associated with a favourable prognosis and cisplatin sensitivity in epithelial ovarian cancer.
Ehlén A, Brennan DJ, Nodin B, ..., Pontén F, Jirström K
pii: 1479-5876-8-78 pmc: PMC2936876
J Transl Med 8 (-) 78 [2010-08-20; online 2010-08-20]
Tissue Profiling
PubMed DOI Crossref
Familial cutaneous melanoma.
Hansson J
Adv. Exp. Med. Biol. 685 (-) 134-145 [2010-08-07; online 2010-08-07]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Biological, clinical and population relevance of 95 loci for blood lipids.
Teslovich TM, Musunuru K, Smith AV, ..., Boehnke M, Kathiresan S
pii: nature09270 pmc: PMC3039276 mid: NIHMS213289
Nature 466 (7307) 707-713 [2010-08-05; online 2010-08-06]
NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]
PubMed DOI Crossref
Niemann-Pick C1 modulates hepatic triglyceride metabolism and its genetic variation contributes to serum triglyceride levels.
Uronen RL, Lundmark P, Orho-Melander M, ..., Syvänen AC, Ikonen E
pii: ATVBAHA.110.207191
Arterioscler. Thromb. Vasc. Biol. 30 (8) 1614-1620 [2010-08-00; online 2010-05-22]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Topoisomerase I amplification in melanoma is associated with more advanced tumours and poor prognosis.
Ryan D, Rafferty M, Hegarty S, ..., Dervan PA, Gallagher WM
pii: PCR720
Pigment Cell Melanoma Res 23 (4) 542-553 [2010-08-00; online 2010-05-15]
Tissue Profiling
PubMed DOI Crossref
Sex-linked barring in chickens is controlled by the CDKN2A /B tumour suppressor locus.
Hellström AR, Sundström E, Gunnarsson U, ..., Kerje S, Andersson L
pii: PCR700
Pigment Cell Melanoma Res 23 (4) 521-530 [2010-08-00; online 2010-04-09]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
No evidence for Z-chromosome rearrangements between the pied flycatcher and the collared flycatcher as judged by gene-based comparative genetic maps.
Backström N, Palkopoulou E, Qvarnström A, Ellegren H
pii: MEC4742
Mol. Ecol. 19 (16) 3394-3405 [2010-08-00; online 2010-07-31]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
The role of IL-1beta in reduced IL-7 production by stromal and epithelial cells: a model for impaired T-cell numbers in the gut during HIV-1 infection.
Thang PH, Ruffin N, Brodin D, ..., Vivar N, Chiodi F
pii: JIM2241
J. Intern. Med. 268 (2) 181-193 [2010-08-00; online 2010-05-26]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genome-wide association study identifies a sequence variant within the DAB2IP gene conferring susceptibility to abdominal aortic aneurysm.
Gretarsdottir S, Baas AF, Thorleifsson G, ..., Thorsteinsdottir U, Stefansson K
pii: ng.622 pmc: PMC4157066 mid: NIHMS592048
Nat. Genet. 42 (8) 692-697 [2010-08-00; online 2010-07-14]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Association of genetic risk variants with expression of proximal genes identifies novel susceptibility genes for cardiovascular disease.
Folkersen L, van't Hooft F, Chernogubova E, ..., Eriksson P, BiKE and ASAP study groups
pii: CIRCGENETICS.110.948935
Circ Cardiovasc Genet 3 (4) 365-373 [2010-08-00; online 2010-06-22]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing.
Wetterbom A, Ameur A, Feuk L, Gyllensten U, Cavelier L
pii: gb-2010-11-7-r78 pmc: PMC2926789
Genome Biol. 11 (7) R78 [2010-07-23; online 2010-07-23]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
A functional polymorphism in the HMGCR promoter affects transcriptional activity but not the risk for Alzheimer disease in Swedish populations.
Keller L, Murphy C, Wang HX, ..., Graff C, Meaney S
pii: S0006-8993(10)01009-7
Brain Res. 1344 (-) 185-191 [2010-07-16; online 2010-05-11]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Induction patterns of new CYP1 genes in environmentally exposed rainbow trout.
Jönsson ME, Gao K, Olsson JA, Goldstone JV, Brandt I
pii: S0166-445X(10)00088-3 pmc: PMC2892734 mid: NIHMS194180
Aquat. Toxicol. 98 (4) 311-321 [2010-07-15; online 2010-04-08]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Different SNP combinations in the GCH1 gene and use of labor analgesia.
Dabo F, Grönbladh A, Nyberg F, Sundström-Poromaa I, Akerud H
pii: 1744-8069-6-41 pmc: PMC2912270
Mol Pain 6 (-) 41 [2010-07-15; online 2010-07-15]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo.
Wei GH, Badis G, Berger MF, ..., Bulyk ML, Taipale J
pii: emboj2010106 pmc: PMC2905244
EMBO J. 29 (13) 2147-2160 [2010-07-07; online 2010-06-03]
Karolinska High Throughput Center (KHTC)
PubMed DOI Crossref
Topoisomerase I regulates open chromatin and controls gene expression in vivo.
Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K
pii: emboj2010109 pmc: PMC2905247
EMBO J. 29 (13) 2126-2134 [2010-07-07; online 2010-06-08]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing.
Hedskog C, Mild M, Jernberg J, ..., Andersson B, Albert J
pmc: PMC2898805
PLoS ONE 5 (7) e11345 [2010-07-07; online 2010-07-07]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Classification of DNA sequences using Bloom filters.
Stranneheim H, Käller M, Allander T, ..., Arvestad L, Lundeberg J
pii: btq230 pmc: PMC2887045
Bioinformatics 26 (13) 1595-1600 [2010-07-01; online 2010-05-18]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Subcellular distribution and expression of prenylated Rab acceptor 1 domain family, member 2 (PRAF2) in malignant glioma: Influence on cell survival and migration.
Borsics T, Lundberg E, Geerts D, ..., Wester K, Bachmann AS
pii: CAS1570
Cancer Sci. 101 (7) 1624-1631 [2010-07-00; online 2010-04-24]
Cell Profiling
PubMed DOI Crossref
Tissue factor pathway inhibitor-2 is induced by fluid shear stress in vascular smooth muscle cells and affects cell proliferation and survival.
Ekstrand J, Razuvaev A, Folkersen L, Roy J, Hedin U
pii: S0741-5214(10)00667-1
J. Vasc. Surg. 52 (1) 167-175 [2010-07-00; online 2010-06-12]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Gene expression analysis in hypoplastic lungs in the nitrofen model of congenital diaphragmatic hernia.
Burgos CM, Uggla AR, Fagerström-Billai F, ..., Frenckner B, Nord M
pii: S0022-3468(09)00764-7
J. Pediatr. Surg. 45 (7) 1445-1454 [2010-07-00; online 2010-07-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Revolutionizing membrane protein overexpression in bacteria.
Schlegel S, Klepsch M, Gialama D, ..., Slotboom DJ, de Gier JW
pmc: PMC3815807
Microb Biotechnol 3 (4) 403-411 [2010-07-00; online 2009-09-04]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Characterization of the RNA content of chromatin.
Mondal T, Rasmussen M, Pandey GK, Isaksson A, Kanduri C
pii: gr.103473.109 pmc: PMC2892091 GEO: GSE21227
Genome Res. 20 (7) 899-907 [2010-07-00; online 2010-04-21]
Array and Analysis Facility NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Ontogenetic complexity of sexual dimorphism and sex-specific selection.
Mank JE, Nam K, Brunström B, Ellegren H
pii: msq042
Mol. Biol. Evol. 27 (7) 1570-1578 [2010-07-00; online 2010-02-10]
Array and Analysis Facility
PubMed DOI Crossref
Genetic evidence of multiple loci in dystocia--difficult labour.
Algovik M, Kivinen K, Peterson H, Westgren M, Kere J
pii: 1471-2350-11-105 pmc: PMC2914646
BMC Med. Genet. 11 (-) 105 [2010-06-30; online 2010-06-30]
Bioinformatics and Expression Analysis (BEA)
PubMed
HIV-1 exposed uninfected men who have sex with men have increased levels of salivary CC-chemokines associated with sexual behavior.
Hasselrot K, Bratt G, Duvefelt K, ..., Sandström E, Broliden K
AIDS 24 (10) 1569-1575 [2010-06-19; online 2010-06-16]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Genome-wide mapping of estrogen receptor-beta-binding regions reveals extensive cross-talk with transcription factor activator protein-1.
Zhao C, Gao H, Liu Y, ..., Gustafsson JA, Dahlman-Wright K
pii: 0008-5472.CAN-09-4407
Cancer Res. 70 (12) 5174-5183 [2010-06-15; online 2010-05-27]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Interstitial Deletions at 6q14.1-q15 Associated with Obesity, Developmental Delay and a Distinct Clinical Phenotype.
Wentzel C, Lynch SA, Stattin EL, ..., Annerén G, Thuresson AC
pmc: PMC2941842 pii: 314025
Mol Syndromol 1 (2) 75-81 [2010-06-09; online 2010-06-09]
Array and Analysis Facility NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Analysis of oestrogen regulation of alpha-, beta- and gamma-secretase gene and protein expression in cultured human neuronal and glial cells.
Nord LC, Sundqvist J, Andersson E, Fried G
pii: 000282279
Neurodegener Dis 7 (6) 349-364 [2010-06-04; online 2010-06-04]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genetic diversity and differentiation among Lagopus lagopus populations in Scandinavia and Scotland: evolutionary significant units confirmed by SNP markers.
Quintela M, Berlin S, Wang B, Höglund J
pii: MEC4648
Mol. Ecol. 19 (12) 2380-2393 [2010-06-01; online 2010-07-20]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
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Tissue tumor marker expression in smokers, including serum cotinine concentrations, in women with cervical intraepithelial neoplasia or normal squamous cervical epithelium.
Samir R, Asplund A, Tot T, Pekar G, Hellberg D
pii: S0002-9378(09)02208-X
Am. J. Obstet. Gynecol. 202 (6) 579.e1-579.e7 [2010-06-00; online 2010-01-12]
Tissue Profiling
PubMed DOI Crossref
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities.
Jolma A, Kivioja T, Toivonen J, ..., Ukkonen E, Taipale J
pii: gr.100552.109 pmc: PMC2877582
Genome Res. 20 (6) 861-873 [2010-06-00; online 2010-04-10]
Karolinska High Throughput Center (KHTC) NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed
Alpha terpineol: a potential anticancer agent which acts through suppressing NF-kappaB signalling.
Hassan SB, Gali-Muhtasib H, Göransson H, Larsson R
pii: 30/6/1911
Anticancer Res. 30 (6) 1911-1919 [2010-06-00; online 2010-07-24]
Array and Analysis Facility
PubMed DOI Crossref
Improving Bayesian credibility intervals for classifier error rates using maximum entropy empirical priors.
Gustafsson MG, Wallman M, Wickenberg Bolin U, ..., Andersson CR, Isaksson A
pii: S0933-3657(10)00025-4
Artif Intell Med 49 (2) 93-104 [2010-06-00; online 2010-03-30]
Array and Analysis Facility
PubMed DOI Crossref
A variant near the interleukin-6 gene is associated with fat mass in Caucasian men.
Andersson N, Strandberg L, Nilsson S, ..., Jansson JO, Osteoporotic Fractures in Men MrOS Research Group
pii: ijo201027 pmc: PMC2885503 mid: NIHMS169541
Int J Obes (Lond) 34 (6) 1011-1019 [2010-06-00; online 2010-02-17]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
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Genetic analysis of metabolic traits in an intercross between body weight-selected chicken lines.
Ek W, Strömstedt L, Wahlberg P, ..., Andersson L, Carlborg O
pii: physiolgenomics.00149.2009
Physiol. Genomics 42 (1) 20-22 [2010-06-00; online 2010-03-25]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed
Antibody-based proteomics for discovery and exploration of proteins expressed in pancreatic islets.
Lindskog C, Asplund A, Engkvist M, ..., Korsgren O, Ponten F
Discov Med 9 (49) 565-578 [2010-06-00; online 2010-07-01]
Tissue Profiling
PubMed DOI Crossref
Genetics of HPA-axis, depression and suicidality.
Wasserman D, Wasserman J, Sokolowski M
pii: S0924-9338(10)00062-3
Eur. Psychiatry 25 (5) 278-280 [2010-06-00; online 2010-05-07]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Molecular make-up of the glomerular filtration barrier.
Patrakka J, Tryggvason K
pii: S0006-291X(10)00738-2
Biochem. Biophys. Res. Commun. 396 (1) 164-169 [2010-05-21; online 2010-05-25]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk.
Reynolds CA, Hong MG, Eriksson UK, ..., Pedersen NL, Prince JA
pii: ddq079 pmc: PMC2860895
Hum. Mol. Genet. 19 (10) 2068-2078 [2010-05-15; online 2010-02-20]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Adipose tissue pathways involved in weight loss of cancer cachexia.
Dahlman I, Mejhert N, Linder K, ..., Rydén M, Arner P
pii: 6605665 pmc: PMC2869165
Br. J. Cancer 102 (10) 1541-1548 [2010-05-11; online 2010-04-22]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genetic risk factors in lupus nephritis and IgA nephropathy--no support of an overlap.
Vuong MT, Gunnarsson I, Lundberg S, ..., Jacobson SH, Padyukov L
pmc: PMC2866667
PLoS ONE 5 (5) e10559 [2010-05-10; online 2010-05-10]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Chd1 remodelers maintain open chromatin and regulate the epigenetics of differentiation.
Persson J, Ekwall K
pii: S0014-4827(10)00091-1
Exp. Cell Res. 316 (8) 1316-1323 [2010-05-01; online 2010-03-10]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia.
Deneberg S, Grövdal M, Karimi M, ..., Hellström-Lindberg E, Lehmann S
pii: leu201041
Leukemia 24 (5) 932-941 [2010-05-00; online 2010-03-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Abundance and expression of enantioselective rdpA and sdpA dioxygenase genes during degradation of the racemic herbicide (R,S)-2-(2,4-dichlorophenoxy)propionate in soil.
Paulin MM, Nicolaisen MH, Sørensen J
pii: AEM.02270-09 pmc: PMC2863469 GENBANK: GQ922849 GENBANK: GQ922850 GENBANK: GQ922851 GENBANK: GQ922852 GENBANK: GQ922853 GENBANK: GQ922854 GENBANK: GQ922855 GENBANK: GQ922856 GENBANK: GQ922857 GENBANK: GQ922858 GENBANK: GQ922859 GENBANK: GQ922860 GENBANK: GQ922861 GENBANK: GQ922862 GENBANK: GQ922863 GENBANK: GQ922864 GENBANK: GQ922865 GENBANK: GQ922866 GENBANK: GQ922867 GENBANK: GQ922868 GENBANK: GQ922869 GENBANK: GQ922870 GENBANK: GQ922871 GENBANK: GQ922872 GENBANK: GQ922873 GENBANK: GQ922874 GENBANK: GQ922875 GENBANK: GQ922876 GENBANK: GQ922877 GENBANK: GQ922878 GENBANK: GQ922879 GENBANK: GQ922880 GENBANK: GQ922881 GENBANK: GQ922882 GENBANK: GQ922883
Appl. Environ. Microbiol. 76 (9) 2873-2883 [2010-05-00; online 2010-03-23]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Detailed physiologic characterization reveals diverse mechanisms for novel genetic Loci regulating glucose and insulin metabolism in humans.
Ingelsson E, Langenberg C, Hivert MF, ..., Florez JC, MAGIC investigators
pii: db09-1568 pmc: PMC2857908
Diabetes 59 (5) 1266-1275 [2010-05-00; online 2010-02-27]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
The impact of RNA standardization and heterogeneous gene expression on the results of cDNA array of human breast carcinoma.
Khoshnoud R, He Q, Sylván M, ..., Rutqvist L, Skog S
Int. J. Mol. Med. 25 (5) 735-741 [2010-05-00; online 2010-04-08]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Mapping of the fibroblast growth factors in human white adipose tissue.
Mejhert N, Galitzky J, Pettersson AT, ..., Arner P, Rydén M
pii: jc.2009-2049
J. Clin. Endocrinol. Metab. 95 (5) 2451-2457 [2010-05-00; online 2010-03-17]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
A STAT4 risk allele is associated with ischaemic cerebrovascular events and anti-phospholipid antibodies in systemic lupus erythematosus.
Svenungsson E, Gustafsson J, Leonard D, ..., Syvänen AC, Rönnblom L
pii: ard.2009.115535
Ann. Rheum. Dis. 69 (5) 834-840 [2010-05-00; online 2009-09-19]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Variation in STAT4 is associated with systemic lupus erythematosus in a Finnish family cohort.
Hellquist A, Sandling JK, Zucchelli M, ..., Syvänen AC, Kere J
pii: ard.2009.112284
Ann. Rheum. Dis. 69 (5) 883-886 [2010-05-00; online 2009-09-01]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
A single fixation protocol for proteome-wide immunofluorescence localization studies.
Stadler C, Skogs M, Brismar H, Uhlén M, Lundberg E
pii: S1874-3919(09)00310-8
J Proteomics 73 (6) 1067-1078 [2010-04-18; online 2009-11-10]
Cell Profiling
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Increased throughput by parallelization of library preparation for massive sequencing.
Lundin S, Stranneheim H, Pettersson E, Klevebring D, Lundeberg J
pmc: PMC2850305
PLoS ONE 5 (4) e10029 [2010-04-06; online 2010-04-06]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Tumour-specific HMG-CoAR is an independent predictor of recurrence free survival in epithelial ovarian cancer.
Brennan DJ, Brändstedt J, Rexhepaj E, ..., O'Herlihy C, Jirstrom K
pii: 1471-2407-10-125 pmc: PMC3087316
BMC Cancer 10 (-) 125 [2010-04-01; online 2010-04-01]
Tissue Profiling
PubMed DOI Crossref
The recombination landscape of the zebra finch Taeniopygia guttata genome.
Backström N, Forstmeier W, Schielzeth H, ..., Kempenaers B, Ellegren H
pii: gr.101410.109 pmc: PMC2847751
Genome Res. 20 (4) 485-495 [2010-04-00; online 2010-03-31]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
ELMOD2, a candidate gene for idiopathic pulmonary fibrosis, regulates antiviral responses.
Pulkkinen V, Bruce S, Rintahaka J, ..., Matikainen S, Kere J
pii: fj.09-138545
FASEB J. 24 (4) 1167-1177 [2010-04-00; online 2009-12-08]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Reaction mechanism of 5,8-linoleate diol synthase, 10R-dioxygenase, and 8,11-hydroperoxide isomerase of Aspergillus clavatus.
Jernerén F, Garscha U, Hoffmann I, Hamberg M, Oliw EH
pii: S1388-1981(09)00292-3
Biochim. Biophys. Acta 1801 (4) 503-507 [2010-04-00; online 2010-01-05]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed
Increased serum progesterone and estradiol correlate to increased COX-2 tissue expression in cervical intraepithelial neoplasia.
Samir R, Tot T, Asplund A, Pekar G, Hellberg D
pii: 30/4/1217
Anticancer Res. 30 (4) 1217-1222 [2010-04-00; online 2010-06-10]
Tissue Profiling
PubMed DOI Crossref
Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution.
Völker M, Backström N, Skinner BM, ..., Ellegren H, Griffin DK
pii: gr.103663.109 pmc: PMC2847753
Genome Res. 20 (4) 503-511 [2010-04-00; online 2010-03-31]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
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Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.
Smith NL, Chen MH, Dehghan A, ..., Tang W, O'Donnell CJ
pii: CIRCULATIONAHA.109.869156 pmc: PMC2861278 mid: NIHMS189970
Circulation 121 (12) 1382-1392 [2010-03-30; online 2010-03-17]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Genome-wide characterisation of the Gcn5 histone acetyltransferase in budding yeast during stress adaptation reveals evolutionarily conserved and diverged roles.
Xue-Franzén Y, Johnsson A, Brodin D, ..., Bürglin TR, Wright AP
pii: 1471-2164-11-200 pmc: PMC2861062
BMC Genomics 11 (-) 200 [2010-03-25; online 2010-03-25]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Whole-genome resequencing reveals loci under selection during chicken domestication.
Rubin C, Zody MC, Eriksson J, ..., Lindblad-Toh K, Andersson L
pii: nature08832 GENBANK: GU323512 GENBANK: GU323513 GENBANK: GU323514 GENBANK: GU323515 GENBANK: GU323516 GENBANK: GU323517 GENBANK: GU323518 GENBANK: GU323519 GENBANK: GU323520 GENBANK: GU323521 GENBANK: GU323522 GENBANK: GU323523 GENBANK: GU323524 GENBANK: GU323525 GENBANK: GU323526 GENBANK: GU323527 GENBANK: GU323528 GENBANK: GU323529 GENBANK: GU323530 GENBANK: GU323531 GENBANK: GU323532 GENBANK: GU323533 GENBANK: GU323534 GENBANK: GU323535 GENBANK: GU323536 GENBANK: GU323537 GENBANK: GU323538 GENBANK: GU323539 GENBANK: GU323540 GENBANK: GU323541 GENBANK: GU323542 GENBANK: GU323543 GENBANK: GU323544 GENBANK: GU323545 GENBANK: GU323546 GENBANK: GU323547 GENBANK: GU323548 GENBANK: GU323549 GENBANK: GU323550 GENBANK: GU323551 GENBANK: GU323552 GENBANK: GU323553 GENBANK: GU323554 GENBANK: GU323555 GENBANK: GU323556
Nature 464 (7288) 587-591 [2010-03-25; online 2010-03-12]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
In-depth transcriptome analysis reveals novel TARs and prevalent antisense transcription in human cell lines.
Klevebring D, Bjursell M, Emanuelsson O, Lundeberg J
pmc: PMC2845605
PLoS ONE 5 (3) e9762 [2010-03-25; online 2010-03-25]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome.
Jakobsson HE, Jernberg C, Andersson AF, ..., Jansson JK, Engstrand L
pmc: PMC2844414
PLoS ONE 5 (3) e9836 [2010-03-24; online 2010-03-24]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Sustained inflammation due to nuclear factor-kappa B activation in irradiated human arteries.
Halle M, Gabrielsen A, Paulsson-Berne G, ..., Farnebo F, Tornvall P
pii: S0735-1097(10)00142-7
J. Am. Coll. Cardiol. 55 (12) 1227-1236 [2010-03-23; online 2010-03-20]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Investigation of gene dosage imbalances in patients with Noonan syndrome using multiplex ligation-dependent probe amplification analysis.
Nyström AM, Ekvall S, Thuresson AC, ..., Annerén G, Bondeson ML
pii: S1769-7212(10)00017-0
Eur J Med Genet 53 (3) 117-121 [2010-03-17; online 2010-03-17]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Global and unbiased detection of splice junctions from RNA-seq data.
Ameur A, Wetterbom A, Feuk L, Gyllensten U
pii: gb-2010-11-3-r34 pmc: PMC2864574 GEO: GSE14605
Genome Biol. 11 (3) R34 [2010-03-17; online 2010-03-17]
NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
The sexually antagonistic genes of Drosophila melanogaster.
Innocenti P, Morrow EH
pmc: PMC2838750
PLoS Biol. 8 (3) e1000335 [2010-03-16; online 2010-03-16]
Array and Analysis Facility
PubMed DOI Crossref
The tryptophan hydroxylase 1 (TPH1) gene, schizophrenia susceptibility, and suicidal behavior: a multi-centre case-control study and meta-analysis.
Saetre P, Lundmark P, Wang A, ..., Terenius L, Jönsson EG
Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (2) 387-396 [2010-03-05; online 2009-06-16]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Association between methylenetetrahydrofolate reductase (MTHFR) C677T polymorphism and age of onset in schizophrenia.
Vares M, Saetre P, Deng H, ..., Terenius L, Jönsson EG
Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (2) 610-618 [2010-03-05; online 2009-09-12]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.
Künstner A, Wolf JB, Backström N, ..., Warren WC, Ellegren H
pii: MEC4487 pmc: PMC2904817 mid: NIHMS216459
Mol. Ecol. 19 Suppl 1 (-) 266-276 [2010-03-00; online 2010-04-02]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Appearance of Cxcl10-expressing cell clusters is common for traumatic brain injury and neurodegenerative disorders.
Israelsson C, Bengtsson H, Lobell A, ..., Hillered L, Ebendal T
pii: EJN7105
Eur. J. Neurosci. 31 (5) 852-863 [2010-03-00; online 2010-04-09]
Array and Analysis Facility
PubMed DOI Crossref
The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells.
Paavilainen L, Edvinsson A, Asplund A, ..., Pontén F, Wester K
pii: jhc.2009.954321 pmc: PMC2825489
J. Histochem. Cytochem. 58 (3) 237-246 [2010-03-00; online 2009-11-11]
Tissue Profiling
PubMed
Molecular profiling using tissue microarrays as a tool to identify predictive biomarkers in laryngeal cancer treated with radiotherapy.
Holgersson G, Ekman S, Reizenstein J, ..., Hellström K, Bergström S
pii: 7/1/1
Cancer Genomics Proteomics 7 (1) 1-7 [2010-02-26; online 2010-02-26]
Tissue Profiling
PubMed DOI Crossref
Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing.
Sandberg J, Neiman M, Ahmadian A, Lundeberg J
pii: 1471-2164-11-140 pmc: PMC2842249
BMC Genomics 11 (-) 140 [2010-02-26; online 2010-02-26]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus.
Berlin S, Lagercrantz U, von Arnold S, Ost T, Rönnberg-Wästljung AC
pii: 1471-2164-11-129 pmc: PMC2834636
BMC Genomics 11 (-) 129 [2010-02-23; online 2010-02-23]
NGI Uppsala (SNP&SEQ Technology Platform) NGI Uppsala (Uppsala Genome Center) National Genomics Infrastructure
PubMed DOI Crossref
Coffee consumption and CYP1A2 genotype in relation to bone mineral density of the proximal femur in elderly men and women: a cohort study.
Hallström H, Melhus H, Glynn A, ..., Syvänen AC, Michaëlsson K
pii: 1743-7075-7-12 pmc: PMC2842270
Nutr Metab (Lond) 7 (-) 12 [2010-02-22; online 2010-02-22]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
DNA methylation for subtype classification and prediction of treatment outcome in patients with childhood acute lymphoblastic leukemia.
Milani L, Lundmark A, Kiialainen A, ..., Lönnerholm G, Syvänen AC
pii: blood-2009-04-214668
Blood 115 (6) 1214-1225 [2010-02-11; online 2009-12-08]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
SUMOylation mediates the nuclear translocation and signaling of the IGF-1 receptor.
Sehat B, Tofigh A, Lin Y, ..., Lagergren J, Larsson O
pii: 3/108/ra10
Sci Signal 3 (108) ra10 [2010-02-09; online 2010-02-09]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Coexisting NRAS and BRAF mutations in primary familial melanomas with specific CDKN2A germline alterations.
Jovanovic B, Egyhazi S, Eskandarpour M, ..., Hayward NK, Hansson J
pii: S0022-202X(15)34686-8 pmc: PMC3665509 mid: NIHMS468846
J. Invest. Dermatol. 130 (2) 618-620 [2010-02-00; online 2009-09-18]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Sensitive plasma protein analysis by microparticle-based proximity ligation assays.
Darmanis S, Nong RY, Hammond M, ..., Landegren U, Kamali-Moghaddam M
pii: M900248-MCP200 pmc: PMC2830843
Mol. Cell Proteomics 9 (2) 327-335 [2010-02-00; online 2009-12-04]
PLA and Single Cell Proteomics
PubMed DOI Crossref
Genetic variants and disease-associated factors contribute to enhanced interferon regulatory factor 5 expression in blood cells of patients with systemic lupus erythematosus.
Feng D, Stone RC, Eloranta ML, ..., Rönnblom L, Barnes BJ
pmc: PMC3213692 mid: NIHMS190566
Arthritis Rheum. 62 (2) 562-573 [2010-02-00; online 2010-01-30]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Global gene expression analysis of rodent motor neurons following spinal cord injury associates molecular mechanisms with development of postinjury spasticity.
Wienecke J, Westerdahl AC, Hultborn H, Kiehn O, Ryge J
pii: 00609.2009
J. Neurophysiol. 103 (2) 761-778 [2010-02-00; online 2009-11-27]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.
Lantermann AB, Straub T, Strålfors A, ..., Ekwall K, Korber P
pii: nsmb.1741 GEO: GSE16040
Nat. Struct. Mol. Biol. 17 (2) 251-257 [2010-02-00; online 2010-01-31]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Connective tissue growth factor is expressed in malignant cells of Hodgkin lymphoma but not in other mature B-cell lymphomas.
Birgersdotter A, Baumforth KR, Wei W, ..., Porwit A, Ernberg I
pii: 133/2/271
Am. J. Clin. Pathol. 133 (2) 271-280 [2010-02-00; online 2010-01-23]
Bioinformatics and Expression Analysis (BEA)
PubMed DOI Crossref
Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.
Saxena R, Hivert MF, Langenberg C, ..., Wareham NJ, Watanabe RM
pii: ng.521 pmc: PMC2922003 mid: NIHMS226512
Nat. Genet. 42 (2) 142-148 [2010-02-00; online 2010-01-19]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Comparative protein profiling of serum and plasma using an antibody suspension bead array approach.
Schwenk JM, Igel U, Kato BS, ..., Uhlén M, Nilsson P
Proteomics 10 (3) 532-540 [2010-02-00; online 2009-12-03]
Translational Plasma Profiling [Technology development]
PubMed DOI Crossref
Sequence variation in SORL1 and dementia risk in Swedes.
Reynolds CA, Hong MG, Eriksson UK, ..., Bennet AM, Prince JA
pmc: PMC2867467 mid: NIHMS196956
Neurogenetics 11 (1) 139-142 [2010-02-00; online 2009-08-05]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.
Dupuis J, Langenberg C, Prokopenko I, ..., Florez JC, Barroso I
pii: ng.520 pmc: PMC3018764 mid: NIHMS259059
Nat. Genet. 42 (2) 105-116 [2010-02-00; online 2010-01-19]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Infection of mast cells with live streptococci causes a toll-like receptor 2- and cell-cell contact-dependent cytokine and chemokine response.
Rönnberg E, Guss B, Pejler G
pii: IAI.01004-09 pmc: PMC2812202
Infect. Immun. 78 (2) 854-864 [2010-02-00; online 2009-11-26]
Array and Analysis Facility
PubMed DOI Crossref
Genetic and biochemical studies of SNPs of the mitochondrial A beta-degrading protease, hPreP.
Pinho CM, Björk BF, Alikhani N, ..., Glaser E, Graff C
pii: S0304-3940(09)01566-3
Neurosci. Lett. 469 (2) 204-208 [2010-01-22; online 2009-12-08]
Mutation Analysis Facility (MAF)
PubMed DOI Crossref
Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia.
Kanduri M, Cahill N, Göransson H, ..., Isaksson A, Rosenquist R
pii: blood-2009-07-232868
Blood 115 (2) 296-305 [2010-01-14; online 2009-11-10]
Array and Analysis Facility NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
Association study of PDE4B gene variants in Scandinavian schizophrenia and bipolar disorder multicenter case-control samples.
Kähler AK, Otnaess MK, Wirgenes KV, ..., Andreassen OA, Djurovic S
Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (1) 86-96 [2010-01-05; online 2009-04-08]
NGI Uppsala (SNP&SEQ Technology Platform) National Genomics Infrastructure
PubMed DOI Crossref
A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins.
Ensterö M, Akerborg O, Lundin D, ..., Ohman M, Lagergren J
pii: 1471-2105-11-6 pmc: PMC2831006
BMC Bioinformatics 11 (-) 6 [2010-01-04; online 2010-01-04]
NGI Stockholm (Genomics Applications) NGI Stockholm (Genomics Production) National Genomics Infrastructure
PubMed DOI Crossref
Large but not small copy-number alterations correlate to high-risk genomic aberrations and survival in chronic lymphocytic leukemia: a high-resolution genomic screening of newly diagnosed patients.
Gunnarsson R, Isaksson A, Mansouri M, ..., Juliusson G, Rosenquist R
pii: leu2009187 GEO: GSE16406
Leukemia 24 (1) 211-215 [2010-01-00; online 2009-09-11]
Array and Analysis Facility
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