SciLifeLab Infrastructure Units Publications

Publications by year

The 20 most recent publications

Identification of a SNAI1 enhancer RNA that drives cancer cell plasticity.

Fan C, Wang Q, Krijger PHL, ..., de Laat W, Ten Dijke P

Nat Commun 16 (1) 2890 [2025-03-25; online 2025-03-25]

Genetic liability for anxiety and treatment response to the monoamine stabilizer OSU6162 in alcohol dependence: a retrospective secondary analysis.

Hong MG, Khemiri L, Guterstam J, ..., Jayaram-Lindström N, Melas PA

Pharmacol Rep - (-) - [2025-03-12; online 2025-03-12]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Historic manioc genomes illuminate maintenance of diversity under long-lived clonal cultivation.

Kistler L, de Oliveira Freitas F, Gutaker RM, ..., Capriles JM, Allaby RG

Science 387 (6738) eadq0018 [2025-03-07; online 2025-03-07]

Ancient DNA [Collaborative]

PubMed DOI Crossref

Antisense-mediated regulation of exon usage in the elastic spring region of Titin modulates sarcomere function.

Celik S, Hyrefelt L, Czuba T, ..., Smith JG, Gidlöf O

Cardiovasc. Res. - (-) - [2025-03-05; online 2025-03-05]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Decreased levels and function of dendritic cells in blood and airways predict COVID-19 severity.

Österberg B, Falck-Jones S, Vangeti S, ..., Färnert A, Smed-Sörensen A

Clin Transl Immunology 14 (3) e70026 [2025-03-03; online 2025-03-03]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Associations of PFAS and OH-PCBs with risk of multiple sclerosis onset and disability worsening.

Vaivade A, Erngren I, Carlsson H, ..., Burman J, Kultima K

Nat Commun 16 (1) 2014 [2025-02-27; online 2025-02-27]

Bioinformatics (NBIS) [Collaborative] Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

Duplexed CeTEAM drug biosensors reveal determinants of PARP inhibitor selectivity in cells.

Pires MJ, Alam S, Lovric A, ..., Altun M, Valerie NCK

J. Biol. Chem. - (-) 108361 [2025-02-26; online 2025-02-26]

Chemical Biology Consortium Sweden (CBCS) [Service]

DOI Crossref

Dissecting the properties of circulating IgG against streptococcal pathogens through a combined systems antigenomics-serology workflow

Gomez Toledo A, Chowdhury S, Hjortswang E, ..., Rasmussen M, Malmström J

Nat Commun 16 (1) - [2025-02-24; online 2025-02-24]

Structural Proteomics [Collaborative]

DOI Crossref

Spatial mapping of DNA synthesis reveals dynamics and geometry of human replication nanostructures

Hawgood M, Urién González B, Agostinho A, ..., Blom H, Lemmens B

- - (-) - [2025-02-23; online 2025-02-23]

Integrated Microscopy Technologies Stockholm [Service]

PubMed DOI Crossref

Measuring plasma membrane fluidity using confocal microscopy.

Carravilla P, Andronico L, Schlegel J, ..., Lorent J, Sezgin E

Nat Protoc - (-) - [2025-02-19; online 2025-02-19]

Integrated Microscopy Technologies Stockholm [Service]

PubMed DOI Crossref

A chromosome-level genome assembly of the European green toad (Bufotes viridis).

Rödin-Mörch P, Bunikis I, Choi E, ..., Proux-Wéra E, Höglund J

G3 (Bethesda) - (-) - [2025-02-19; online 2025-02-19]

NGI Long read [Collaborative] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Collaborative]

PubMed DOI Crossref

Methodological aspects of investigating the resistome in pig farm environments.

Ladyhina V, Rajala E, Sternberg-Lewerin S, ..., Bongcam-Rudloff E, Dicksved J

J Microbiol Methods 230-231 (-) 107103 [2025-02-13; online 2025-02-13]

Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]

PubMed DOI Crossref

Imaging Single Particle Profiler to Study Nanoscale Bioparticles Using Conventional Confocal Microscopy.

Sych T, Görgens A, Steiner L, ..., El Andaloussi S, Sezgin E

Nano Lett. 25 (6) 2173-2180 [2025-02-12; online 2025-01-29]

Integrated Microscopy Technologies Stockholm [Service]

PubMed DOI Crossref

Rare and common single nucleotide variants in childhood-onset systemic lupus erythematosus.

Sayadi A, Sandling JK, Eloranta ML, ..., Rönnblom L, DISSECT Consortium

Lupus Sci Med 12 (1) - [2025-02-11; online 2025-02-11]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Whole genome sequencing in early onset advanced heart failure.

Linnér E, Czuba T, Gidlöf O, ..., Ehrencrona H, Smith JG

Sci Rep 15 (1) 4306 [2025-02-05; online 2025-02-05]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

The expanded genome of Hexamita inflata, a free-living diplomonad.

Akdeniz Z, Havelka M, Stoklasa M, ..., Andersson JO, Tachezy J

Sci Data 12 (1) 192 [2025-02-01; online 2025-02-01]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Single cell sequencing reveals shared clonal signatures in non-malignant B- and tumor cells in T-prolymphocytic leukemia

Hesselager C, Thörn I, Marincevic M, ..., Baliakas P, Amini RM

Blood Neoplasia - (-) 100076 [2025-02-00; online 2025-02-00]

Clinical Genomics [Collaborative] Clinical Genomics Uppsala [Collaborative]

DOI Crossref

Impact of plant diversity in potato-ley strip-cropping systems on soil microbial communities

Riggi LGA, Ranheim Sveen T, Castaño C, ..., Clemmensen KE, Bahram M

Applied Soil Ecology 206 (-) 105777 [2025-02-00; online 2025-02-00]

Bioinformatics Support for Computational Resources [Service]

PubMed DOI Crossref

Modulation of biological activities in adipose derived stem cells by histone deacetylation.

Abdallah S, Tabebi M, Qanadilo S, ..., Elmasry M, El-Serafi A

Sci Rep 15 (1) 3629 [2025-01-29; online 2025-01-29]

Clinical Genomics [Collaborative] Clinical Genomics Linköping [Collaborative]

PubMed DOI Crossref

A de novo, mosaic and complex chromosome 21 rearrangement causes APP triplication and familial autosomal dominant early onset Alzheimer disease.

Ehn E, Eisfeldt J, Laffita-Mesa JM, ..., Nennesemo I, Graff C

Sci Rep 15 (1) 2912 [2025-01-23; online 2025-01-23]

Clinical Genomics [Service] Clinical Genomics Stockholm [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]