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SciLifeLab Infrastructure Units Publications

The publications in this database are the result of research assisted by the infrastructure units of SciLifeLab.

Publications by SciLifeLab Fellows and other researchers affiliated with SciLifeLab are available in a separate database at https://publications-affiliated.scilifelab.se/.

Publications by year

Infrastructure Units

The 20 most recent publications

PubMed DOI Crossref

Incontinentia pigmenti underlies thymic dysplasia, autoantibodies to type I IFNs, and viral diseases.

Rosain J, Le Voyer T, Liu X, ..., Anderson MS, Casanova JL

J. Exp. Med. 221 (11) - [2024-11-04; online 2024-10-01]

Autoimmunity and Serology Profiling [Service]

PubMed DOI Crossref

The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment.

Techameena P, Feng X, Zhang K, Hadjab S

Nat Commun 15 (1) 8585 [2024-10-04; online 2024-10-04]

NGI Single cell [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

IL-7-dependent and -independent lineages of IL-7R-dependent human T cells.

Arango-Franco CA, Ogishi M, Unger S, ..., Casanova JL, Puel A

J. Clin. Invest. 134 (19) - [2024-10-01; online 2024-10-01]

Autoimmunity and Serology Profiling [Service]

Sex estimation using long bones in the largest burial site of the Copper Age: Linear discriminant analysis and random forest

Díaz-Navarro S, Díez-Hermano S, Rojo-Guerra MA, ..., Gunther T, Uriarte MH

Journal of Archaeological Science: Reports 58 (-) 104730 [2024-10-00; online 2024-10-00]

Ancient DNA [Service]

PubMed DOI Crossref

Merging multi-omics with proteome integral solubility alteration unveils antibiotic mode of action.

Maity R, Zhang X, Liberati FR, ..., Aínsa JA, Sancho J

Elife 13 (-) - [2024-09-27; online 2024-09-27]

Chemical Proteomics [Collaborative]

PubMed DOI Crossref

CDK4 is co-amplified with either TP53 promoter gene fusions or MDM2 through distinct mechanisms in osteosarcoma.

Saba KH, Difilippo V, Styring E, ..., Baumhoer D, Nord KH

npj Genom. Med. 9 (1) 42 [2024-09-25; online 2024-09-25]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

Chemical Exposomics in Human Plasma by Lipid Removal and Large-Volume Injection Gas Chromatography–High-Resolution Mass Spectrometry

Xie H, Sdougkou K, Bonnefille B, ..., Rantakokko P, Martin JW

Environ. Sci. Technol. - (-) - [2024-09-24; online 2024-09-24]

Exposomics [Technology development]

PubMed DOI Crossref

Determining Marine Biodegradation Kinetics of Chemicals Discharged from Offshore Oil Platforms─Whole Mixture Testing at High Dilutions Increases Environmental Relevance.

Møller MT, Birch H, Sjøholm KK, ..., Papazian S, Mayer P

Environ. Sci. Technol. - (-) - [2024-09-18; online 2024-09-18]

Exposomics [Collaborative]

PubMed DOI Crossref

Longitudinal Exposomics in a Multiomic Wellness Cohort Reveals Distinctive and Dynamic Environmental Chemical Mixtures in Blood.

Sdougkou K, Papazian S, Bonnefille B, ..., Martin LJ, Martin JW

Environ. Sci. Technol. 58 (37) 16302-16315 [2024-09-17; online 2024-09-05]

Exposomics [Collaborative]

PubMed DOI Crossref

Chromosome-level genome assembly of the morabine grasshopper Vandiemenella viatica19.

Li X, Jayaprasad S, Einarsdottir E, ..., Kawakami T, Palacios-Gimenez OM

Sci Data 11 (1) 997 [2024-09-12; online 2024-09-12]

NGI Long read [Service] NGI Other [Service] NGI Short read [Service] NGI Stockholm (Genomics Production) [Collaborative] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Enrichment of Cis-Acting Regulatory Elements in Differentially Methylated Regions Following Lipopolysaccharide Treatment of Bovine Endometrial Epithelial Cells.

Jhamat N, Guo Y, Han J, ..., Andersson G, Niazi A

Int J Mol Sci 25 (18) - [2024-09-11; online 2024-09-11]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Inherited human RelB deficiency impairs innate and adaptive immunity to infection.

Le Voyer T, Maglorius Renkilaraj MRL, Moriya K, ..., Tangye SG, Puel A

Proc. Natl. Acad. Sci. U.S.A. 121 (37) e2321794121 [2024-09-10; online 2024-09-04]

Autoimmunity and Serology Profiling [Service]

PubMed DOI Crossref

Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma.

Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y

J. Clin. Invest. - (-) - [2024-09-10; online 2024-09-10]

CRISPR Functional Genomics [Service]

PubMed DOI Crossref

Immune system adaptation during gender-affirming testosterone treatment

Tadepally L, Consiglio C, Sardh F, ..., Landegren N, Brodin P

Nature 633 (-) 155-164 [2024-09-04]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

ADAR3 modulates neuronal differentiation and regulates mRNA stability and translation.

Karlström V, Sagredo EA, Planells J, ..., Visa N, Öhman M

Nucleic Acids Res. - (-) - [2024-09-01; online 2024-09-01]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

New finds of European bison identified through the systematic DNA-based species identification of archaeological remains of large bovines from Scandinavia

Rosengren E, Rossi C, Heino MT, Sinding MHS

Journal of Archaeological Science: Reports 57 (-) 104668 [2024-09-00; online 2024-09-00]

Ancient DNA [Service]

PubMed DOI Crossref

Immune system adaptation during gender-affirming testosterone treatment.

Lakshmikanth T, Consiglio C, Sardh F, ..., Landegren N, Brodin P

Nature 633 (8028) 155-164 [2024-09-00; online 2024-09-04]

Affinity Proteomics Stockholm [Service]

PubMed DOI Crossref

Plastome evolution in Santalales involves relaxed selection prior to loss of ndh genes and major boundary shifts of the inverted repeat.

Edlund M, Anderson BM, Su HJ, ..., Nickrent DL, Petersen G

Ann. Bot. - (-) - [2024-08-30; online 2024-08-30]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

DNA methylation governs the sensitivity of repeats to restriction by the HUSH-MORC2 corepressor.

Pandiloski N, Horváth V, Karlsson O, ..., Jakobsson J, Douse CH

Nat Commun 15 (1) 7534 [2024-08-30; online 2024-08-30]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

Identification of novel and potent inhibitors of SARS-CoV-2 main protease from DNA-encoded chemical libraries

Akaberi D, Pourghasemi Lati M, Krambrich J, ..., Verho O, Lennerstrand J

Antimicrob Agents Chemother - (-) - [2024-08-28; online 2024-08-28]

Drug Discovery and Development (DDD) [Collaborative]

SciLifeLab Data Centre

Publications 9.5.0