SciLifeLab Infrastructure Units Publications

Publications by year

The 20 most recent publications

Scifer: An R/Bioconductor package for large-scale integration of Sanger sequencing and flow cytometry data of index-sorted single cells

Arcoverde Cerveira R, Lenart K, Martin M, ..., Ols S, Loré K

Immunoinformatics (Amst) 16 (-) 100046 [2024-12-00; online 2024-12-00]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Genomic signals of adaptation to a natural CO2 gradient over a striking microgeographic scale

González-Delgado S, Pérez-Portela R, Ortega-Martínez O, ..., Pereyra RT, Hernández JC

Marine Pollution Bulletin 209 (-) 117225 [2024-12-00; online 2024-12-00]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Genetic diversity insights from population genomics and machine learning tools for Nordic Arctic charr (Salvelinus alpinus) populations

Palaiokostas C, Kurta K, Pappas F, ..., Janhunen M, Kause A

Aquaculture Reports 39 (-) 102495 [2024-12-00; online 2024-12-00]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Achieving optically selective coatings of silica fixated carbon nanotubes for solar energy applications

Zäll E, Segervald J, Mahmoodi H, ..., Edman L, Wågberg T

Solar Energy Materials and Solar Cells 278 (-) 113202 [2024-12-00; online 2024-12-00]

Integrated Microscopy Technologies Umeå [Service]

DOI Crossref

Unraveling the dynamics of lignin chemistry on decomposition to understand its contribution to soil organic matter accumulation

Thirunavukkarasu A, Hedenström M, Sparrman T, ..., Schleucher J, Öquist M

Plant Soil - (-) - [2024-11-19; online 2024-11-19]

Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

Inhibition mechanism of potential antituberculosis compound lansoprazole sulfide.

Kovalova T, Król S, Gamiz-Hernandez AP, ..., Brzezinski P, Högbom M

Proc. Natl. Acad. Sci. U.S.A. 121 (47) e2412780121 [2024-11-19; online 2024-11-12]

Cryo-EM [Service]

Järn och gravar i Våmb

Gustafsson J, Nordman A, Hjärthner-Holdar E, Stilborg O

Jönköping läns museum arkeologisk rapport 2024:07 - (-) - [2024-11-15]

Ancient DNA [Service]

PubMed DOI Crossref

A genome-wide association study in Swedish colorectal cancer patients with gastric- and prostate cancer in relatives.

Samola Winnberg J, Vermani L, Liu W, ..., Lindblad M, Lindblom A

Hered Cancer Clin Pract 22 (1) 25 [2024-11-14; online 2024-11-14]

NGI SNP genotyping [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

A comprehensive human embryo reference tool using single-cell RNA-sequencing data

Zhao C, Plaza Reyes A, Schell JP, ..., Petropoulos S, Lanner F

Nat Methods - (-) - [2024-11-14; online 2024-11-14]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Prospective Screening of Cancer Syndromes in Patients with Mesenchymal Tumors

Öfverholm I, Lin Y, Mondini J, ..., Haglund de Flon F, Wallander K

Cancers (Basel) 16 (22) 3816 [2024-11-13; online 2024-11-13]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

PubMed DOI Crossref

ATP1A3 dysfunction causes motor hyperexcitability and afterhyperpolarization loss in a dystonia model.

Akkuratov EE, Sorrell F, Picton L, ..., Miles GB, Aperia A

Brain - (-) - [2024-11-13; online 2024-11-13]

Integrated Microscopy Technologies Stockholm [Service]

PubMed DOI Crossref

Simultaneous detection of membrane contact dynamics and associated Ca2+ signals by reversible chemogenetic reporters.

García Casas P, Rossini M, Påvénius L, ..., Pizzo P, Filadi R

Nat Commun 15 (1) 9775 [2024-11-12; online 2024-11-12]

Integrated Microscopy Technologies Stockholm [Collaborative]

PubMed DOI Crossref

MassiveFold: unveiling AlphaFold's hidden potential with optimized and parallelized massive sampling.

Raouraoua N, Mirabello C, Véry T, ..., Lensink MF, Brysbaert G

Nat Comput Sci - (-) - [2024-11-11; online 2024-11-11]

Bioinformatics Support, Infrastructure and Training [Technology development]

PubMed DOI Crossref

A unique symbiosome in an anaerobic single-celled eukaryote.

Jerlström-Hultqvist J, Gallot-Lavallée L, Salas-Leiva DE, ..., Archibald JM, Roger AJ

Nat Commun 15 (1) 9726 [2024-11-09; online 2024-11-09]

Integrated Microscopy Technologies Umeå [Service]

PubMed DOI Crossref

SARS-CoV-2 and HSV-1 Induce Amyloid Aggregation in Human CSF Resulting in Drastic Soluble Protein Depletion.

Christ W, Kapell S, Sobkowiak MJ, ..., El Andaloussi S, Ezzat K

ACS Chem Neurosci - (-) - [2024-11-07; online 2024-11-07]

Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Transmembrane peptide-loaded ionic liquid nanocarriers for targeting ErbB2-positive cancer

Abujubara H, Bharmoria P, Alvarez S, ..., Sayin V, Tietze A

- - (-) - [2024-11-06; online 2024-11-06]

Integrated Microscopy Technologies Gothenburg [Service]

PubMed DOI Crossref

The structure and function of P5A-ATPases.

Li P, Bågenholm V, Hägglund P, ..., Wang K, Gourdon P

Nat Commun 15 (1) 9605 [2024-11-06; online 2024-11-06]

Cryo-EM [Service]

PubMed DOI Crossref

DMI fungicide resistance in Zymoseptoria tritici is unlinked to geographical origin and genetic background: a case study in Europe.

Oreiro EG, Samils B, Kildea S, ..., Zhan J, Andersson B

Pest Manag Sci - (-) - [2024-11-06; online 2024-11-06]

NGI Long read [Service] NGI Uppsala (Uppsala Genome Center) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Pasteurella multocida from deep nasal swabs and tracheobronchial lavage in bovine calves from Sweden.

Myrenås M, Pringle M, Harbom B, Bengtsson B

Acta Vet. Scand. 66 (1) 58 [2024-11-05; online 2024-11-05]

Clinical Genomics Stockholm [Service]

PubMed DOI Crossref

Population pharmacokinetic modelling of cetirizine concentrations in human breast milk-A contribution from the ConcePTION project.

Melander E, Nielsen EI, Lindqvist A, ..., Spigset O, Nordeng H

Basic Clin Pharmacol Toxicol - (-) - [2024-11-04; online 2024-11-04]

Drug Discovery and Development (DDD) [Collaborative]