SciLifeLab Infrastructure Units Publications

Publications by year

The 20 most recent publications

PubMed DOI Crossref

Spatiotemporal single-cell roadmap of human skin wound healing.

Liu Z, Bian X, Luo L, ..., Li D, Landén NX

Cell Stem Cell - (-) - [2024-12-18; online 2024-12-18]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Dark carbon fixation is a common process in the water column of stratified boreal lakes.

Martin G, Rissanen AJ, Garcia SL, Peura S

Sci. Total Environ. 958 (-) 177433 [2024-12-10; online 2024-12-10]

NGI Short read [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Naturally acquired IgG responses to Plasmodium falciparum do not target the conserved termini of the malaria vaccine candidate Merozoite Surface Protein 2

Zerebinski J, Margerie L, Han NS, ..., Färnert A, Plaza DF

Front Immunol 15 (-) - [2024-12-09; online 2024-12-09]

Autoimmunity and Serology Profiling [Collaborative]

PubMed DOI Crossref

Coupling cellular drug-target engagement to downstream pharmacology with CeTEAM.

Valerie NCK, Sanjiv K, Mortusewicz O, ..., Page BDG, Altun M

Nat Commun 15 (1) 10347 [2024-12-06; online 2024-12-06]

Chemical Biology Consortium Sweden (CBCS) [Service]

PubMed DOI Crossref

Chemical exposomics in biobanked plasma samples and associations with breast cancer risk factors.

Edlund J, Sdougkou K, Papazian S, ..., Martin JW, Harlid S

J Expo Sci Environ Epidemiol - (-) - [2024-12-06; online 2024-12-06]

Exposomics [Collaborative]

PubMed DOI Crossref

Multi-omics analysis detail a submicroscopic inv(15)(q14q15) generating fusion transcripts and MEIS2 and NUSAP1 haploinsufficiency.

Ek M, Kvarnung M, Pettersson M, ..., Eisfeldt J, Lindstrand A

Sci Rep 14 (1) 30343 [2024-12-05; online 2024-12-05]

NGI Long read [Service] NGI Short read [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

A landscape of X-inactivation during human T cell development.

Gylemo B, Bensberg M, Hennings V, ..., Ekwall O, Nestor CE

Nat Commun 15 (1) 10527 [2024-12-04; online 2024-12-04]

Clinical Genomics Linköping [Service]

DOI Crossref

Scifer: An R/Bioconductor package for large-scale integration of Sanger sequencing and flow cytometry data of index-sorted single cells

Arcoverde Cerveira R, Lenart K, Martin M, ..., Ols S, Loré K

Immunoinformatics (Amst) 16 (-) 100046 [2024-12-00; online 2024-12-00]

Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support for Computational Resources [Service] Bioinformatics Support, Infrastructure and Training [Collaborative]

DOI Crossref

Genomic signals of adaptation to a natural CO2 gradient over a striking microgeographic scale

González-Delgado S, Pérez-Portela R, Ortega-Martínez O, ..., Pereyra RT, Hernández JC

Marine Pollution Bulletin 209 (-) 117225 [2024-12-00; online 2024-12-00]

NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

DOI Crossref

Genetic diversity insights from population genomics and machine learning tools for Nordic Arctic charr (Salvelinus alpinus) populations

Palaiokostas C, Kurta K, Pappas F, ..., Janhunen M, Kause A

Aquaculture Reports 39 (-) 102495 [2024-12-00; online 2024-12-00]

Bioinformatics Support for Computational Resources [Service] NGI Short read [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

PubMed DOI Crossref

Applications of NMR based methodologies investigating the behavior of lignin and cellulose towards bio-based carbon fibers production.

Guerroudj F, Fliri L, Bengtsson J, ..., Hummel M, Bernin D

Solid State Nucl Magn Reson 134 (-) 101977 [2024-12-00; online 2024-11-21]

Swedish NMR Centre (SNC) [Service]

DOI Crossref

Achieving optically selective coatings of silica fixated carbon nanotubes for solar energy applications

Zäll E, Segervald J, Mahmoodi H, ..., Edman L, Wågberg T

Solar Energy Materials and Solar Cells 278 (-) 113202 [2024-12-00; online 2024-12-00]

Integrated Microscopy Technologies Umeå [Service]

PubMed DOI Crossref

Toward target 2035: EUbOPEN - a public-private partnership to enable & unlock biology in the open.

Tredup C, Ackloo S, Beck H, ..., Arrowsmith CH, Knapp S

RSC Med Chem - (-) - [2024-11-29; online 2024-11-29]

Chemical Biology Consortium Sweden (CBCS) [Technology development]

PubMed DOI Crossref

Spatial profiling of the mouse colonic immune landscape associated with colitis and sex.

Holm M, Stepanauskaitė L, Bäckström A, ..., Stadler C, Williams C

Commun Biol 7 (1) 1595 [2024-11-29; online 2024-11-29]

Affinity Proteomics Stockholm [Service]

PubMed DOI Crossref

Closed and open structures of the eukaryotic magnesium channel Mrs2 reveal the auto-ligand-gating regulation mechanism.

Li P, Liu S, Wallerstein J, ..., Liin SI, Gourdon P

Nat. Struct. Mol. Biol. - (-) - [2024-11-28; online 2024-11-28]

Cryo-EM [Service]

DOI Crossref

Preanalytical (Mis)Handling of Plasma Investigated by 1H NMR Metabolomics

Malmodin D, Bay Nord A, Zafar H, ..., Karlsson BG, Naluai ÅT

ACS Omega - (-) - [2024-11-27; online 2024-11-27]

Swedish NMR Centre (SNC) [Collaborative]

PubMed DOI Crossref

Streptolysin O accelerates the conversion of plasminogen to plasmin

Tang D, Khakzad H, Hjortswang E, ..., Happonen L, Malmström J

Nat Commun 15 (1) 10212 [2024-11-25; online 2024-11-25]

Structural Proteomics [Technology development]

DOI Crossref

In-situ X-ray analysis of cold alkali dissolution of cellulose pulps of various origin

Wojtasz J, Bengtsson J, Ulmefors H, ..., Östlund Å, Yu S

Cellulose - (-) - [2024-11-25; online 2024-11-25]

Swedish NMR Centre (SNC) [Service]

PubMed DOI Crossref

Candidate serum protein biomarkers for active pulmonary tuberculosis diagnosis in tuberculosis endemic settings.

Ayalew S, Wegayehu T, Wondale B, ..., Fredolini C, Mihret A

BMC Infect. Dis. 24 (1) 1329 [2024-11-21; online 2024-11-21]

Affinity Proteomics Stockholm [Collaborative]

PubMed DOI Crossref

A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities.

Eisfeldt J, Ameur A, Lenner F, ..., Feuk L, Lindstrand A

Genome Res. 34 (11) 1774-1784 [2024-11-20; online 2024-11-20]

Bioinformatics Support for Computational Resources [Service] Clinical Genomics Umeå [Collaborative] Clinical Genomics Uppsala [Collaborative] NGI Long read [Technology development] NGI Uppsala (Uppsala Genome Center) [Technology development] National Genomics Infrastructure [Technology development]