Glycoproteomics

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SciLifeLab Infrastructure Unit Since 2021.

Primary: Shown in the list of current labels, if end date is not specified.

Started: 2021

Ended: Current

Year 2023

PubMed DOI Crossref
Subtyping of cardiac amyloidosis by mass spectrometry-based proteomics of endomyocardial biopsies.
Noborn F, Thomsen C, Vorontsov E, ..., Oldfors A, Larson G
Amyloid 30 (1) 96-108 [2023-03-00; online 2022-10-09]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Isobaric labeling-based quantitative proteomics of FACS-purified immune cells and epithelial cells from the intestine of Crohn's disease patients reveals proteome changes of potential importance in disease pathogenesis.
Alfredsson J, Fabrik I, Gorreja F, ..., Lindskog EB, Wick MJ
Proteomics 23 (5) e2200366 [2023-03-00; online 2022-12-25]
Glycoproteomics [Collaborative]

Year 2022

PubMed DOI Crossref
<i>Aeromonas salmonicida</i> binds α2-6 linked sialic acid, which is absent among the glycosphingolipid repertoires from skin, gill, stomach, pyloric caecum, and intestine.
Benktander J, Sundh H, Sharba S, Teneberg S, Lindén SK
Virulence 13 (1) 1741-1751 [2022-12-00; online 2022-10-08]
Glycoproteomics [Service]
PubMed DOI Crossref
The mechanical regulation of RNA binding protein hnRNPC in the failing heart.
Martino F, Varadarajan NM, Perestrelo AR, ..., Pagliari S, Forte G
Sci Transl Med 14 (672) eabo5715 [2022-11-23; online 2022-11-23]
Glycoproteomics [Service]
PubMed DOI Crossref
Sphingosine 1-phosphate mediates adiponectin receptor signaling essential for lipid homeostasis and embryogenesis.
Ruiz M, Devkota R, Panagaki D, ..., Borén J, Pilon M
Nat Commun 13 (1) 7162 [2022-11-22; online 2022-11-22]
Glycoproteomics [Service]
PubMed DOI Crossref
Ydj1 interaction at nucleotide-binding-domain of yeast Ssa1 impacts Hsp90 collaboration and client maturation.
Gaur D, Kumar N, Ghosh A, ..., Nystrom T, Sharma D
PLoS Genet. 18 (11) e1010442 [2022-11-00; online 2022-11-09]
Glycoproteomics [Service]
PubMed DOI Crossref
A Complex Connection Between the Diversity of Human Gastric Mucin O-Glycans, Helicobacter pylori Binding, Helicobacter Infection and Fucosylation.
Chahal G, Padra M, Erhardsson M, ..., Karlsson NG, Lindén SK
Mol. Cell Proteomics 21 (11) 100421 [2022-11-00; online 2022-09-29]
Glycoproteomics [Service]
PubMed DOI Crossref
Global microRNA and protein expression in human term placenta.
Östling H, Lodefalk M, Backman H, Kruse R
Front Med (Lausanne) 9 (-) 952827 [2022-10-18; online 2022-10-18]
Glycoproteomics [Service]
PubMed DOI Crossref
Targeting Myd88 using peptide-loaded mesenchymal stem cell membrane-derived synthetic vesicles to treat systemic inflammation.
Park KS, Bergqvist M, Lässer C, Lötvall J
J Nanobiotechnology 20 (1) 451 [2022-10-15; online 2022-10-15]
Glycoproteomics [Service]
PubMed DOI Crossref
Liver Graft Proteomics Reveals Potential Incipient Mechanisms behind Early Renal Dysfunction after Liver Transplantation.
Norén Å, Oltean M, Friman S, ..., Herlenius G, Thorsell A
Int J Mol Sci 23 (19) - [2022-10-08; online 2022-10-08]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
The dark side of foetal bovine serum in extracellular vesicle studies.
Urzì O, Bagge RO, Crescitelli R
J Extracell Vesicles 11 (10) e12271 [2022-10-00; online 2022-10-11]
Glycoproteomics [Service]
PubMed DOI Crossref
Cytokine responses to LPS in reprogrammed monocytes are associated with the transcription factor PU.1.
Tuerxun K, Midtbö K, Särndahl E, ..., Eklund D, X-HiDE Consortium
J Leukoc Biol 112 (4) 679-692 [2022-10-00; online 2022-03-13]
Glycoproteomics [Service]
PubMed DOI Crossref
Truncated lubricin glycans in osteoarthritis stimulate the synoviocyte secretion of VEGFA, IL-8, and MIP-1α: Interplay between O-linked glycosylation and inflammatory cytokines.
Huang S, Thomsson KA, Jin C, ..., Krawetz R, Karlsson NG
Front Mol Biosci 9 (-) 942406 [2022-09-21; online 2022-09-21]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Expansion of nickel binding- and histidine-rich proteins during gastric adaptation of Helicobacter species.
Fischer F, Vorontsov E, Turlin E, ..., Vinella D, De Reuse H
Metallomics 14 (9) - [2022-09-12; online 2022-08-25]
Glycoproteomics [Service]
PubMed DOI Crossref
Sialic Acid and Fucose Residues on the SARS-CoV-2 Receptor-Binding Domain Modulate IgG Antibody Reactivity.
Samuelsson E, Mirgorodskaya E, Nyström K, ..., Liljeqvist JÅ, Nordén R
ACS Infect Dis 8 (9) 1883-1893 [2022-09-09; online 2022-08-18]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Human CD38 regulates B cell antigen receptor dynamic organization in normal and malignant B cells.
Camponeschi A, Kläsener K, Sundell T, ..., Reth M, Mårtensson IL
J. Exp. Med. 219 (9) - [2022-09-05; online 2022-07-12]
Glycoproteomics [Service]
PubMed DOI Crossref
Quantitative Proteomics Identifies Proteins Enriched in Large and Small Extracellular Vesicles.
Lischnig A, Bergqvist M, Ochiya T, Lässer C
Mol. Cell Proteomics 21 (9) 100273 [2022-09-00; online 2022-07-30]
Glycoproteomics [Service]
PubMed DOI Crossref
Glycosaminoglycan linkage region of urinary bikunin as a potentially useful biomarker for β3GalT6-deficient spondylodysplastic Ehlers-Danlos syndrome.
Nikpour M, Noborn F, Nilsson J, ..., Malfait F, Larson G
JIMD Rep 63 (5) 462-467 [2022-09-00; online 2022-06-28]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Increased expression and accumulation of GDF15 in IPF extracellular matrix contribute to fibrosis.
Radwanska A, Cottage CT, Piras A, ..., Hogaboam CM, Murray LA
JCI Insight 7 (16) - [2022-08-22; online 2022-08-22]
Glycoproteomics [Service]
PubMed DOI Crossref
Sulfated glycan recognition by carbohydrate sulfatases of the human gut microbiota.
Luis AS, Baslé A, Byrne DP, ..., Martens EC, Cartmell A
Nat. Chem. Biol. 18 (8) 841-849 [2022-08-00; online 2022-06-16]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Site-specific glycosylation of proteoglycans: A revisited frontier in proteoglycan research.
Noborn F, Nilsson J, Larson G
Matrix Biol. 111 (-) 289-306 [2022-08-00; online 2022-07-15]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Validated Growth Rate-Dependent Regulation of Lipid Metabolism in Yarrowia lipolytica.
Poorinmohammad N, Fu J, Wabeke B, Kerkhoven EJ
Int J Mol Sci 23 (15) - [2022-07-31; online 2022-07-31]
Glycoproteomics [Service]
PubMed DOI Crossref
In vivo Characterization of Endogenous Protein Interactomes in Drosophila Larval Brain, Using a CRISPR/Cas9-based Strategy and BioID-based Proximity Labeling.
Uçkun E, Wolfstetter G, Fuchs J, Palmer RH
BIO-PROTOCOL 12 (13) - [2022-07-05; online 2022-07-05]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Role of endogenous incretins in the regulation of postprandial lipoprotein metabolism
Taskinen MR, Matikainen N, Björnson E, ..., Packard CJ, Borén J
Eur. J. Endocrinol. 187 (1) 75-84 [2022-07-01; online 2022-05-19]
Glycoproteomics [Service]
PubMed DOI Crossref
Suppressors of amyloid-β toxicity improve recombinant protein production in yeast by reducing oxidative stress and tuning cellular metabolism.
Chen X, Li X, Ji B, ..., Siewers V, Engqvist MKM
Metab. Eng. 72 (-) 311-324 [2022-07-00; online 2022-05-01]
Glycoproteomics [Service]
PubMed DOI Crossref
Characterization of Decellularized Implants for Extracellular Matrix Integrity and Immune Response Elicitation.
Banerjee D, Nayakawde NB, Antony D, ..., Ul Haq U, Olausson M
Tissue Eng Part A 28 (13-14) 621-639 [2022-07-00; online 2022-06-21]
Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Collaborative]
PubMed DOI Crossref
A novel non-invasive method allowing for discovery of pathologically relevant proteins from small airways.
Östling J, Van Geest M, Olsson HK, ..., Mirgorodskaya E, Olin AC
Clin Proteomics 19 (1) 20 [2022-06-06; online 2022-06-06]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach.
Alves G, Ogurtsov A, Karlsson R, ..., Moore ERB, Yu YK
J. Am. Soc. Mass Spectrom. 33 (6) 917-931 [2022-06-01; online 2022-05-02]
Clinical Genomics Gothenburg [Collaborative] Glycoproteomics [Service]
PubMed DOI Crossref
Site-specific N-glycan profiles of α5 β1 integrin from rat liver.
Mirgorodskaya E, Dransart E, Shafaq-Zadah M, ..., Leffler H, Johannes L
Biol Cell 114 (6) 160-176 [2022-06-00; online 2022-03-31]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Dataset for suppressors of amyloid-β toxicity and their functions in recombinant protein production in yeast.
Chen X, Li X, Ji B, ..., Siewers V, Engqvist MKM
Data Brief 42 (-) 108322 [2022-06-00; online 2022-05-27]
Glycoproteomics [Service]
PubMed DOI Crossref
Optimized sample preparation and data analysis for TMT proteomic analysis of cerebrospinal fluid applied to the identification of Alzheimer's disease biomarkers.
Weiner S, Sauer M, Visser PJ, ..., Zetterberg H, Gobom J
Clin Proteomics 19 (1) 13 [2022-05-14; online 2022-05-14]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
The proteome signature of cord blood plasma with high hematopoietic stem and progenitor cell count
Nilsson AK, Rydbeck H, Thorsell A, ..., Lundgren P, Hellström A
Stem Cell Research 61 (-) 102752 [2022-05-00; online 2022-05-00]
Glycoproteomics [Service]
PubMed DOI Crossref
Tetraspanins distinguish separate extracellular vesicle subpopulations in human serum and plasma - Contributions of platelet extracellular vesicles in plasma samples.
Karimi N, Dalirfardouei R, Dias T, Lötvall J, Lässer C
J Extracell Vesicles 11 (5) e12213 [2022-05-00; online 2022-05-08]
Glycoproteomics [Service]
PubMed DOI Crossref
Age and sex effects across the blood proteome after ionizing radiation exposure can bias biomarker screening and risk assessment.
Langen B, Vorontsov E, Spetz J, ..., Helou K, Forssell-Aronsson E
Sci Rep 12 (1) 7000 [2022-04-29; online 2022-04-29]
Glycoproteomics [Service]
PubMed DOI Crossref
Characterization of the ganglioside recognition profile of Escherichia coli heat-labile enterotoxin LT-IIc.
Zalem D, Juhás M, Terrinoni M, ..., Connell TD, Teneberg S
Glycobiology 32 (5) 391-403 [2022-04-21; online 2022-01-02]
Glycoproteomics [Service]
PubMed DOI Crossref
Silencing of STE20-type kinase STK25 in human aortic endothelial and smooth muscle cells is atheroprotective.
Cansby E, Kumari S, Caputo M, ..., Goncalves I, Mahlapuu M
Commun Biol 5 (1) 379 [2022-04-19; online 2022-04-19]
Bioinformatics Long-term Support WABI [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Glycoproteomics [Service] Systems Biology [Collaborative]
PubMed DOI Crossref
Glycoproteomic and Phenotypic Elucidation of B4GALNT2 Expression Variants in the SID Histo-Blood Group System.
Stenfelt L, Nilsson J, Hellberg Å, ..., Larson G, Olsson ML
Int J Mol Sci 23 (7) - [2022-04-01; online 2022-04-01]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Characterization of novel nonacid glycosphingolipids as biomarkers of human gastric adenocarcinoma.
Jin C, Teneberg S
J. Biol. Chem. 298 (4) 101732 [2022-04-00; online 2022-02-15]
Glycoproteomics [Service]
PubMed DOI Crossref
Extracellular endosulfatase Sulf-2 harbors a chondroitin/dermatan sulfate chain that modulates its enzyme activity.
El Masri R, Seffouh A, Roelants C, ..., Filhol O, Vivès RR
Cell Rep 38 (11) 110516 [2022-03-15; online 2022-03-17]
Glycoproteomics [Service]
PubMed DOI Crossref
Computational Modeling of O-Linked Glycan Biosynthesis in CHO Cells.
Kouka T, Akase S, Sogabe I, ..., Karlsson NG, Aoki-Kinoshita KF
Molecules 27 (6) - [2022-03-08; online 2022-03-08]
Glycoproteomics [Service]
PubMed DOI Crossref
The Role of Antibiotic Resistance Genes in the Fitness Cost of Multiresistance Plasmids.
Rajer F, Sandegren L
MBio 13 (1) e0355221 [2022-02-22; online 2022-01-18]
Glycoproteomics [Service]
PubMed DOI Crossref
Age-related long-term response in rat thyroid tissue and plasma after internal low dose exposure to 131I.
Larsson M, Rudqvist NP, Spetz J, ..., Helou K, Forssell-Aronsson E
Sci Rep 12 (1) 2107 [2022-02-08; online 2022-02-08]
Glycoproteomics [Service]
PubMed DOI Crossref
Proteomic characterisation of polyglucosan bodies in skeletal muscle in RBCK1 deficiency.
Thomsen C, Malfatti E, Jovanovic A, ..., Lindberg C, Oldfors A
Neuropathol Appl Neurobiol 48 (1) e12761 [2022-02-00; online 2021-09-12]
Clinical Genomics Gothenburg [Service] Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Overexpression of the SARS-CoV-2 receptor angiotensin converting enzyme 2 in cardiomyocytes of failing hearts.
Vukusic K, Thorsell A, Muslimovic A, ..., Sandstedt J, Hammarsten O
Sci Rep 12 (1) 965 [2022-01-19; online 2022-01-19]
Glycoproteomics [Collaborative]

Year 2021

PubMed DOI Crossref
Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast.
Malina C, Yu R, Björkeroth J, Kerkhoven EJ, Nielsen J
Proc. Natl. Acad. Sci. U.S.A. 118 (51) - [2021-12-21; online 2021-12-15]
Glycoproteomics [Service]
PubMed DOI Crossref
Changes in the Proteome in the Development of Chronic Human Papillomavirus Infection-A Prospective Study in HIV Positive and HIV Negative Rwandan Women.
Bienvenu E, Mukanyangezi MF, Rulisa S, ..., Tobin G, Giglio D
Cancers (Basel) 13 (23) - [2021-11-28; online 2021-11-28]
Glycoproteomics [Service]
PubMed DOI Crossref
ATR inhibition enables complete tumour regression in ALK-driven NB mouse models.
Szydzik J, Lind DE, Arefin B, ..., Hallberg B, Palmer RH
Nat Commun 12 (1) 6813 [2021-11-24; online 2021-11-24]
Glycoproteomics [Service]
PubMed DOI Crossref
In vivo Profiling of the Alk Proximitome in the Developing Drosophila Brain.
Uçkun E, Wolfstetter G, Anthonydhason V, ..., Fuchs J, Palmer RH
J. Mol. Biol. 433 (23) 167282 [2021-11-19; online 2021-10-06]
Glycoproteomics [Service]
PubMed DOI Crossref
Platelet proteome and function in X-linked thrombocytopenia with thalassemia and in silico comparisons with gray platelet syndrome.
Bergemalm D, Ramström S, Kardeby C, ..., Palmblad J, Åström M
Haematologica 106 (11) 2947-2959 [2021-11-01; online 2021-11-01]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.
Kawahara R, Chernykh A, Alagesan K, ..., Packer NH, Thaysen-Andersen M
Nat. Methods 18 (11) 1304-1316 [2021-11-00; online 2021-11-01]
Glycoproteomics [Service]
PubMed DOI Crossref
A Glycoproteomic Approach to Identify Novel Proteoglycans.
Noborn F, Nikpour M, Persson A, ..., Nilsson J, Larson G
Methods Mol. Biol. 2303 (-) 71-85 [2021-10-10; online 2021-10-10]
Glycoproteomics [Technology development]
PubMed DOI Crossref
Proteomic analysis in diffuse large B-cell lymphoma identifies dysregulated tumor microenvironment proteins in non-GCB/ABC subtype patients.
Bram Ednersson S, Stern M, Fagman H, ..., Thorsell A, Andersson PO
Leuk. Lymphoma 62 (10) 2360-2373 [2021-10-00; online 2021-06-11]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
A single sulfatase is required to access colonic mucin by a gut bacterium.
Luis AS, Jin C, Pereira GV, ..., Cartmell A, Martens EC
Nature 598 (7880) 332-337 [2021-10-00; online 2021-10-06]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Sulfation of O-glycans on Mucin-type Proteins From Serous Ovarian Epithelial Tumors.
Thomsson KA, Vitiazeva V, Mateoiu C, ..., Sundfeldt K, Karlsson NG
Mol. Cell Proteomics 20 (-) 100150 [2021-09-21; online 2021-09-21]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
BioID-Screening Identifies PEAK1 and SHP2 as Components of the ALK Proximitome in Neuroblastoma Cells.
Uçkun E, Siaw JT, Guan J, ..., Hallberg B, Palmer RH
J. Mol. Biol. 433 (19) 167158 [2021-09-17; online 2021-07-15]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Proteoglycan profiling of human, rat and mouse insulin-secreting cells.
Nikpour M, Nilsson J, Persson A, ..., Vorontsov E, Larson G
Glycobiology 31 (8) 916-930 [2021-09-09; online 2021-05-18]
Glycoproteomics [Service]
PubMed DOI Crossref
Expanding the Chondroitin Sulfate Glycoproteome - But How Far?
Noborn F, Nikpour M, Persson A, Nilsson J, Larson G
Front Cell Dev Biol 9 (-) 695970 [2021-08-13; online 2021-08-13]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Quantitative proteomic analysis to identify differentially expressed proteins in patients with epilepsy.
Banote RK, Larsson D, Berger E, Kumlien E, Zelano J
Epilepsy Res 174 (-) 106674 [2021-08-00; online 2021-05-15]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli, and Candida albicans in Blood.
Kondori N, Kurtovic A, Piñeiro-Iglesias B, ..., Moore ERB, Karlsson R
Front. Cell. Infect. Microbiol. 11 (-) 634215 [2021-07-26; online 2021-07-26]
Clinical Genomics Gothenburg [Collaborative] Glycoproteomics [Service]
PubMed DOI Crossref
Synthetic bacterial vesicles combined with tumour extracellular vesicles as cancer immunotherapy.
Park KS, Svennerholm K, Crescitelli R, ..., Gribonika I, Lötvall J
J Extracell Vesicles 10 (9) e12120 [2021-07-00; online 2021-07-03]
Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
An Hsp90 co-chaperone links protein folding and degradation and is part of a conserved protein quality control.
Eisele F, Eisele-Bürger AM, Hao X, ..., Liu B, Nyström T
Cell Rep 35 (13) 109328 [2021-06-29; online 2021-07-01]
Glycoproteomics [Service]
PubMed DOI Crossref
Evidence for discrete modes of YAP1 signaling via mRNA splice isoforms in development and diseases.
Vrbský J, Vinarský V, Perestrelo AR, ..., Pagliari S, Forte G
Genomics 113 (3) 1349-1365 [2021-05-00; online 2021-03-11]
Glycoproteomics [Service]
PubMed DOI Crossref
Effects of liraglutide on the metabolism of triglyceride‐rich lipoproteins in type 2 diabetes
Taskinen M, Björnson E, Matikainen N, ..., Packard CJ, Borén J
Diabetes Obes Metab 23 (5) 1191-1201 [2021-05-00; online 2021-03-05]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Immune-Associated Proteins Are Enriched in Lung Tissue-Derived Extracellular Vesicles during Allergen-Induced Eosinophilic Airway Inflammation.
Lässer C, Kishino Y, Park KS, ..., Rådinger M, Lötvall J
Int J Mol Sci 22 (9) - [2021-04-29; online 2021-04-29]
Glycoproteomics [Service]
PubMed DOI Crossref
Loss of RET Promotes Mesenchymal Identity in Neuroblastoma Cells.
Siaw JT, Gabre JL, Uçkun E, ..., Palmer RH, Guan J
Cancers (Basel) 13 (8) - [2021-04-15; online 2021-04-15]
Glycoproteomics [Service]
PubMed DOI Crossref
CA10 regulates neurexin heparan sulfate addition via a direct binding in the secretory pathway.
Montoliu-Gaya L, Tietze D, Kaminski D, ..., Tietze AA, Sterky FH
EMBO Rep. 22 (4) e51349 [2021-04-07; online 2021-02-15]
Glycoproteomics [Service] Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Domain Mapping of Chondroitin/Dermatan Sulfate Glycosaminoglycans Enables Structural Characterization of Proteoglycans.
Persson A, Nikpour M, Vorontsov E, Nilsson J, Larson G
Mol. Cell Proteomics 20 (-) 100074 [2021-03-20; online 2021-03-20]
Glycoproteomics [Service]
PubMed DOI Crossref
Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast.
Yu R, Vorontsov E, Sihlbom C, Nielsen J
Elife 10 (-) - [2021-03-15; online 2021-03-15]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Isolation and characterization of extracellular vesicle subpopulations from tissues.
Crescitelli R, Lässer C, Lötvall J
Nat Protoc 16 (3) 1548-1580 [2021-03-00; online 2021-01-25]
Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Collaborative]
PubMed DOI Crossref
Elastin-like recombinamers-based hydrogel modulates post-ischemic remodeling in a non-transmural myocardial infarction in sheep.
Contessotto P, Orbanić D, Da Costa M, ..., Rodríguez-Cabello JC, Pandit A
Sci Transl Med 13 (581) - [2021-02-17; online 2021-02-19]
Glycoproteomics [Service]
PubMed DOI Crossref
ALK ligand ALKAL2 potentiates MYCN-driven neuroblastoma in the absence of ALK mutation.
Borenäs M, Umapathy G, Lai WY, ..., Hallberg B, Palmer RH
EMBO J. 40 (3) e105784 [2021-02-01; online 2021-01-07]
Clinical Genomics Gothenburg [Collaborative] Glycoproteomics [Service]
PubMed DOI Crossref
Elastin-like hydrogel stimulates angiogenesis in a severe model of critical limb ischemia (CLI): An insight into the glyco-host response.
Marsico G, Jin C, Abbah SA, ..., McCullagh KJA, Pandit A
Biomaterials 269 (-) 120641 [2021-02-00; online 2021-01-04]
Glycoproteomics [Service]
PubMed DOI Crossref
Effects of Evolocumab on the Postprandial Kinetics of Apo (Apolipoprotein) B100- and B48-Containing Lipoproteins in Subjects With Type 2 Diabetes.
Taskinen MR, Björnson E, Kahri J, ..., Packard CJ, Borén J
Arterioscler. Thromb. Vasc. Biol. 41 (2) 962-975 [2021-02-00; online 2020-12-24]
Glycoproteomics [Service]
PubMed DOI Crossref
Telomeric double-strand DNA-binding proteins DTN-1 and DTN-2 ensure germline immortality in Caenorhabditis elegans.
Yamamoto I, Zhang K, Zhang J, Vorontsov E, Shibuya H
Elife 10 (-) - [2021-01-21; online 2021-01-21]
Glycoproteomics [Service]
PubMed DOI Crossref
Embryo-Like Features in Developing Bacillus subtilis Biofilms.
Futo M, Opašić L, Koska S, ..., Mijakovic I, Domazet-Lošo T
Mol. Biol. Evol. 38 (1) 31-47 [2021-01-04; online 2020-09-02]
Glycoproteomics [Service]
PubMed DOI Crossref
The structure of enteric human adenovirus 41-A leading cause of diarrhea in children.
Rafie K, Lenman A, Fuchs J, ..., Arnberg N, Carlson LA
Sci Adv 7 (2) - [2021-01-00; online 2021-01-08]
Cryo-EM [Service] Glycoproteomics [Collaborative]
PubMed DOI Crossref
Novel non-invasive particles in exhaled air method to explore the lining fluid of small airways-a European population-based cohort study.
Hussain-Alkhateeb L, Bake B, Holm M, ..., Mirgorodskaya E, Olin AC
BMJ Open Respir Res 8 (1) - [2021-01-00; online 2021-01-07]
Glycoproteomics [Service]
PubMed DOI Crossref
A novel type of colistin resistance genes selected from random sequence space.
Knopp M, Babina AM, Gudmundsdóttir JS, ..., Trent MS, Andersson DI
PLoS Genet. 17 (1) e1009227 [2021-01-00; online 2021-01-07]
Glycoproteomics [Service]

Year 2020

PubMed DOI Crossref
Proteomic analysis of follicular fluid during human ovulation.
Zakerkish F, Brännström M, Carlsohn E, ..., van der Post S, Thoroddsen A
Acta Obstet Gynecol Scand 99 (7) 917-924 [2020-07-00; online 2020-04-07]
Glycoproteomics [Service]
PubMed DOI Crossref
Evolution of a New Function by Fusion between Phage DNA and a Bacterial Gene.
Warsi O, Knopp M, Surkov S, Jerlström Hultqvist J, Andersson DI
Mol. Biol. Evol. 37 (5) 1329-1341 [2020-05-01; online 2020-01-25]
Glycoproteomics [Service]
PubMed DOI Crossref
Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping.
Karlsson R, Thorsell A, Gomila M, ..., Kristiansson E, Moore ERB
Mol. Cell Proteomics 19 (3) 518-528 [2020-03-00; online 2020-01-15]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Glycogenin is Dispensable for Glycogen Synthesis in Human Muscle, and Glycogenin Deficiency Causes Polyglucosan Storage.
Visuttijai K, Hedberg-Oldfors C, Thomsen C, ..., Roach P, Oldfors A
J. Clin. Endocrinol. Metab. 105 (2) 557-566 [2020-02-01; online 2019-10-20]
Glycoproteomics [Service]
PubMed DOI Crossref
Exosomes influence the behavior of human mesenchymal stem cells on titanium surfaces.
Wang X, Shah FA, Vazirisani F, ..., Ekström K, Thomsen P
Biomaterials 230 (-) 119571 [2020-02-00; online 2019-10-24]
Glycoproteomics [Service]
PubMed DOI Crossref
NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods.
De Leoz MLA, Duewer DL, Fung A, ..., Yuan H, Stein SE
Mol. Cell Proteomics 19 (1) 11-30 [2020-01-00; online 2019-10-07]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Molecular mechanisms of collateral sensitivity to the antibiotic nitrofurantoin.
Roemhild R, Linkevicius M, Andersson DI
PLoS Biol. 18 (1) e3000612 [2020-01-00; online 2020-01-27]
Glycoproteomics [Service]

Year 2019

PubMed DOI Crossref
Structural and biochemical studies of the glucuronoyl esterase OtCE15A illuminate its interaction with lignocellulosic components.
Mazurkewich S, Poulsen JN, Lo Leggio L, Larsbrink J
J. Biol. Chem. 294 (52) 19978-19987 [2019-12-27; online 2019-11-18]
Glycoproteomics [Service]
PubMed DOI Crossref
Lipid Droplet-Associated Kinase STK25 Regulates Peroxisomal Activity and Metabolic Stress Response in Steatotic Liver.
Nerstedt A, Kurhe Y, Cansby E, ..., Hoy AJ, Mahlapuu M
J. Lipid Res. - (-) - [2019-12-19; online 2019-12-19]
Glycoproteomics [Service]
PubMed DOI Crossref
Apolipoprotein B48 metabolism in chylomicrons and very low-density lipoproteins and its role in triglyceride transport in normo- and hypertriglyceridemic human subjects.
Björnson E, Packard CJ, Adiels M, ..., Taskinen MR, Borén J
J. Intern. Med. - (-) - [2019-12-17; online 2019-12-17]
Glycoproteomics [Service]
PubMed DOI Crossref
Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma
Jang SC, Crescitelli R, Cvjetkovic A, ..., Kalluri R, Lötvall J
J Extracell Vesicles 8 (1) 1635420 [2019-12-01; online 2019-08-27]
Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Endosomal signalling via exosome surface TGFβ-1
Shelke GV, Yin Y, Jang SC, ..., Nilsson JA, Lötvall J
J Extracell Vesicles 8 (1) 1650458 [2019-12-01; online 2019-09-20]
Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service] Integrated Microscopy Technologies Stockholm
PubMed DOI Crossref
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
Rojas-Macias MA, Mariethoz J, Andersson P, ..., Lisacek F, Karlsson NG
Nat Commun 10 (1) - [2019-12-00; online 2019-07-22]
Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] Glycoproteomics [Technology development]
PubMed DOI Crossref
Protein Paucimannosylation Is an Enriched N-Glycosylation Signature of Human Cancers.
Chatterjee S, Lee LY, Kawahara R, ..., Palmisano G, Thaysen-Andersen M
Proteomics 19 (21-22) e1900010 [2019-11-00; online 2019-10-16]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Mice exposed to maternal androgen excess and diet-induced obesity have altered phosphorylation of catechol-O-methyltransferase in the placenta and fetal liver.
Fornes R, Manti M, Qi X, ..., Benrick A, Stener-Victorin E
Int J Obes (Lond) 43 (11) 2176-2188 [2019-11-00; online 2019-01-22]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
DPI Selectively Inhibits Intracellular NADPH Oxidase Activity in Human Neutrophils.
Buck A, Sanchez Klose FP, Venkatakrishnan V, ..., Christenson K, Bylund J
Immunohorizons 3 (10) 488-497 [2019-10-18; online 2019-10-18]
Glycoproteomics [Service]
PubMed DOI Crossref
Reduced sialyl-Lewisx on salivary MUC7 from patients with burning mouth syndrome.
Acharya S, Jin C, Bylund J, ..., Carlén A, Karlsson NG
Mol Omics 15 (5) 331-339 [2019-10-07; online 2019-08-16]
Affinity Proteomics Uppsala [Collaborative] Glycoproteomics [Collaborative] PLA and Single Cell Proteomics [Collaborative]
PubMed DOI Crossref
Upregulation of PBP1B and LpoB in cysB Mutants Confers Mecillinam (Amdinocillin) Resistance in Escherichia coli.
Thulin E, Andersson DI
Antimicrob. Agents Chemother. 63 (10) - [2019-10-00; online 2019-09-23]
Glycoproteomics [Service]
PubMed DOI Crossref
Discovery and development of substituted thiadiazoles as inhibitors of Staphylococcus aureus Sortase A
Wehrli PM, Uzelac I, Olsson T, ..., Tietze D, Gottfries J
Bioorganic & Medicinal Chemistry 27 (19) 115043 [2019-10-00; online 2019-10-00]
Chemical Biology Consortium Sweden (CBCS) [Service] Glycoproteomics [Service] Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Protein prenylation restrains innate immunity by inhibiting Rac1 effector interactions.
Akula MK, Ibrahim MX, Ivarsson EG, ..., Sayin VI, Bergo MO
Nat Commun 10 (1) 3975 [2019-09-04; online 2019-09-04]
Glycoproteomics [Service]
PubMed DOI Crossref
Protein kinase MST3 modulates lipid homeostasis in hepatocytes and correlates with nonalcoholic steatohepatitis in humans.
Cansby E, Kulkarni NM, Magnusson E, ..., Blüher M, Mahlapuu M
FASEB J. 33 (9) 9974-9989 [2019-09-00; online 2019-06-07]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Separation of Isomeric O-Glycans by Ion Mobility and Liquid Chromatography-Mass Spectrometry.
Jin C, Harvey DJ, Struwe WB, Karlsson NG
Anal. Chem. 91 (16) 10604-10613 [2019-08-20; online 2019-08-01]
Glycoproteomics [Technology development]
PubMed DOI Crossref
Glycosylation influences activity, stability and immobilization of the feruloyl esterase 1a from Myceliophthora thermophila.
Bonzom C, Hüttner S, Mirgorodskaya E, ..., Verhaert RMD, Olsson L
AMB Express 9 (1) 126 [2019-08-12; online 2019-08-12]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Deciphering Isomers with a Multiple Reaction Monitoring Method for the Complete Detectable O-Glycan Repertoire of the Candidate Therapeutic, Lubricin.
Flowers SA, Lane CS, Karlsson NG
Anal. Chem. 91 (15) 9819-9827 [2019-08-06; online 2019-07-11]
Glycoproteomics [Technology development]
PubMed DOI Crossref
Role of apolipoprotein C-III overproduction in diabetic dyslipidaemia.
Adiels M, Taskinen MR, Björnson E, ..., Packard C, Borén J
Diabetes Obes Metab 21 (8) 1861-1870 [2019-08-00; online 2019-05-08]
Glycoproteomics [Service]
PubMed DOI Crossref
A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancer.
Shen Q, Polom K, Williams C, ..., Roviello F, Kamali-Moghaddam M
EBioMedicine 44 (-) 322-333 [2019-06-00; online 2019-05-28]
Affinity Proteomics Uppsala [Technology development] Bioinformatics Compute and Storage [Service] Clinical Biomarkers [Service] Glycoproteomics [Collaborative] PLA and Single Cell Proteomics [Technology development]
PubMed DOI Crossref
Distinct glycosylation in membrane proteins within neonatal versus adult myocardial tissue.
Contessotto P, Ellis BW, Jin C, ..., Kilcoyne M, Pandit A
Matrix Biol. - (-) - [2019-05-17; online 2019-05-17]
Glycoproteomics [Service]
PubMed DOI Crossref
Identification of a non-canonical chondroitin sulfate linkage region trisaccharide.
Persson A, Nilsson J, Vorontsov E, Noborn F, Larson G
Glycobiology 29 (5) 366-371 [2019-05-01; online 2019-03-03]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Investigation of human apoB48 metabolism using a new, integrated non-steady-state model of apoB48 and apoB100 kinetics.
Björnson E, Packard CJ, Adiels M, ..., Taskinen MR, Borén J
J. Intern. Med. 285 (5) 562-577 [2019-05-00; online 2019-03-12]
Glycoproteomics [Service]
PubMed DOI Crossref
Helicobacter suis infection alters glycosylation and decreases the pathogen growth inhibiting effect and binding avidity of gastric mucins.
Padra M, Adamczyk B, Flahou B, ..., Karlsson NG, Lindén SK
Mucosal Immunol 12 (3) 784-794 [2019-05-00; online 2019-03-07]
Glycoproteomics [Service]
PubMed DOI Crossref
FET family fusion oncoproteins target the SWI/SNF chromatin remodeling complex.
Lindén M, Thomsen C, Grundevik P, ..., Ståhlberg A, Åman P
EMBO Rep. 20 (5) - [2019-05-00; online 2019-04-08]
Glycoproteomics [Service]
PubMed DOI Crossref
Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells.
Masoumi Z, Maes GE, Herten K, ..., Familari M, Hansson SR
Int J Mol Sci 20 (8) - [2019-04-25; online 2019-04-25]
Glycoproteomics [Service]
PubMed DOI Crossref
Exploring the Arctic Charr Intestinal Glycome: Evidence of Increased N-Glycolylneuraminic Acid Levels and Changed Host-Pathogen Interactions in Response to Inflammation.
Venkatakrishnan V, Padra JT, Sundh H, ..., Karlsson NG, Lindén SK
J. Proteome Res. 18 (4) 1760-1773 [2019-04-05; online 2019-03-19]
Glycoproteomics [Service]
PubMed DOI Crossref
Univariate and classification analysis reveals potential diagnostic biomarkers for early stage ovarian cancer Type 1 and Type 2.
Marcišauskas S, Ulfenborg B, Kristjansdottir B, Waldemarson S, Sundfeldt K
J Proteomics 196 (-) 57-68 [2019-03-30; online 2019-01-30]
Glycoproteomics [Service]
PubMed DOI Crossref
Recombinant Glycoprotein E of Varicella Zoster Virus Contains Glycan-Peptide Motifs That Modulate B Cell Epitopes into Discrete Immunological Signatures.
Nordén R, Nilsson J, Samuelsson E, ..., Olofsson S, Bergström T
Int J Mol Sci 20 (4) - [2019-02-22; online 2019-02-22]
Glycoproteomics [Service]
PubMed DOI Crossref
GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.
Alocci D, Mariethoz J, Gastaldello A, ..., Packer NH, Lisacek F
J. Proteome Res. 18 (2) 664-677 [2019-02-01; online 2019-01-15]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli.
Joffre E, Nicklasson M, Álvarez-Carretero S, ..., Zhu B, Sjöling Å
Sci Rep 9 (1) 108 [2019-01-14; online 2019-01-14]
Glycoproteomics [Service]

Year 2018

PubMed DOI Crossref
Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics.
Karlsson R, Gonzales-Siles L, Gomila M, ..., Kristiansson E, Moore ERB
PLoS ONE 13 (12) e0208804 [2018-12-10; online 2018-12-10]
Glycoproteomics [Service]
PubMed DOI Crossref
A novel ulvan lyase family with broad-spectrum activity from the ulvan utilisation loci of Formosa agariphila KMM 3901
Konasani VR, Jin C, Karlsson NG, Albers E
Sci Rep 8 (1) - [2018-12-00; online 2018-10-02]
Glycoproteomics [Service] Swedish NMR Centre (SNC) [Service]
PubMed DOI Crossref
Isomeric Separation and Recognition of Anionic and Zwitterionic N-glycans from Royal Jelly Glycoproteins.
Hykollari A, Malzl D, Eckmair B, ..., Wilson IBH, Paschinger K
Mol. Cell Proteomics 17 (11) 2177-2196 [2018-11-00; online 2018-08-13]
Glycoproteomics [Service]
PubMed DOI Crossref
Glycomics@ExPASy: Bridging the Gap.
Mariethoz J, Alocci D, Gastaldello A, ..., Packer NH, Lisacek F
Mol. Cell Proteomics 17 (11) 2164-2176 [2018-11-00; online 2018-08-10]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Copper Chaperone Atox1 Interacts with Cell Cycle Proteins.
Matson Dzebo M, Blockhuys S, Valenzuela S, ..., Esbjörner EK, Wittung-Stafshede P
Computational and Structural Biotechnology Journal 16 (-) 443-449 [2018-10-31; online 2018-10-31]
Glycoproteomics [Service]
PubMed DOI Crossref
Detection of post-translational modifications using solid-phase proximity ligation assay.
Oliveira FMS, Mereiter S, Lönn P, ..., Reis CA, Kamali-Moghaddam M
N Biotechnol 45 (-) 51-59 [2018-10-25; online 2017-10-31]
Affinity Proteomics Uppsala [Technology development] Glycoproteomics [Technology development] PLA and Single Cell Proteomics [Technology development]
PubMed DOI Crossref
Amplification of the Melanocortin-1 Receptor in Nephrotic Syndrome Identifies a Target for Podocyte Cytoskeleton Stabilization.
Bergwall L, Wallentin H, Elvin J, ..., Nyström J, Buvall L
Sci Rep 8 (1) 15731 [2018-10-24; online 2018-10-24]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Identification of Potential Plasma Biomarkers for Abdominal Aortic Aneurysm Using Tandem Mass Tag Quantitative Proteomics.
Henriksson AE, Lindqvist M, Sihlbom C, Bergström J, Bylund D
Proteomes 6 (4) - [2018-10-18; online 2018-10-18]
Glycoproteomics [Service]
PubMed DOI Crossref
BabA-mediated adherence of pediatric ulcerogenic H. pylori strains to gastric mucins at neutral and acidic pH.
Quintana-Hayashi MP, Rocha R, Padra M, ..., Oleastro M, Lindén SK
Virulence 9 (1) 1699-1717 [2018-10-10; online 2018-10-10]
Glycoproteomics [Service]
PubMed DOI Crossref
Higher Energy Collisional Dissociation Mass Spectrometry of Sulfated O-Linked Oligosaccharides.
Issa SMA, Vitiazeva V, Hayes CA, Karlsson NG
J. Proteome Res. 17 (9) 3259-3267 [2018-09-07; online 2018-08-13]
Glycoproteomics [Technology development]
PubMed DOI Crossref
The Thomsen-Friedenreich Antigen: A Highly Sensitive and Specific Predictor of Microsatellite Instability in Gastric Cancer.
Mereiter S, Polom K, Williams C, ..., Magalhães A, Reis CA
J Clin Med 7 (9) - [2018-09-05; online 2018-09-05]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Pharmacokinetic Properties of the Nephrotoxin Orellanine in Rats.
Najar D, Haraldsson B, Thorsell A, ..., Nyström J, Ebefors K
Toxins (Basel) 10 (8) - [2018-08-17; online 2018-08-17]
Glycoproteomics [Service]
PubMed DOI Crossref
Detailed analysis of the plasma extracellular vesicle proteome after separation from lipoproteins
Karimi N, Cvjetkovic A, Jang SC, ..., Lötvall J, Lässer C
Cell. Mol. Life Sci. 75 (15) 2873-2886 [2018-08-00; online 2018-02-13]
Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
A bacteriophage enzyme induces bacterial metabolic perturbation that confers a novel promiscuous function.
Jerlström Hultqvist J, Warsi O, Söderholm A, ..., Selmer M, Andersson DI
Nat Ecol Evol 2 (8) 1321-1330 [2018-08-00; online 2018-05-28]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Effective Assignment of α2,3/α2,6-Sialic Acid Isomers by LC-MS/MS-Based Glycoproteomics.
Pett C, Nasir W, Sihlbom C, ..., Nilsson J, Westerlind U
Angew. Chem. Int. Ed. Engl. 57 (30) 9320-9324 [2018-07-20; online 2018-06-20]
Glycoproteomics [Technology development]
PubMed DOI Crossref
LC-MS/MS characterization of xyloside-primed glycosaminoglycans with cytotoxic properties reveals structural diversity and novel glycan modifications.
Persson A, Gomez Toledo A, Vorontsov E, ..., Nilsson J, Larson G
J. Biol. Chem. 293 (26) 10202-10219 [2018-06-29; online 2018-05-08]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Expression of ribosomal and actin network proteins and immunochemotherapy resistance in diffuse large B cell lymphoma patients
Bram Ednersson S, Stenson M, Stern M, ..., Hasselblom S, Andersson PO
Br J Haematol 181 (6) 770-781 [2018-06-00; online 2018-05-16]
Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]
PubMed DOI Crossref
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award.
Mirgorodskaya E, Karlsson NG, Sihlbom C, Larson G, Nilsson CL
J. Am. Soc. Mass Spectrom. 29 (6) 1065-1074 [2018-06-00; online 2018-04-11]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Identification of Potential MR-Derived Biomarkers for Tumor Tissue Response to 177Lu-Octreotate Therapy in an Animal Model of Small Intestine Neuroendocrine Tumor.
Montelius M, Spetz J, Jalnefjord O, ..., Ljungberg M, Forssell-Aronsson E
Transl Oncol 11 (2) 193-204 [2018-04-00; online 2018-01-11]
Glycoproteomics [Service]
PubMed DOI Crossref
Innate immune alterations are elicited in microglial cells before plaque deposition in the Alzheimer's disease mouse model 5xFAD.
Boza-Serrano A, Yang Y, Paulus A, Deierborg T
Sci Rep 8 (1) 1550 [2018-01-24; online 2018-01-24]
Glycoproteomics [Service]
PubMed DOI Crossref
The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators.
Jers C, Ravikumar V, Lezyk M, ..., Wai SN, Mijakovic I
Front. Cell. Infect. Microbiol. 7 (-) 537 [2018-01-11; online 2018-01-11]
Glycoproteomics [Service]
PubMed DOI Crossref
Sample handling of gastric tissue and O-glycan alterations in paired gastric cancer and non-tumorigenic tissues.
Adamczyk B, Jin C, Polom K, ..., Roviello F, Karlsson NG
Sci Rep 8 (1) 242 [2018-01-10; online 2018-01-10]
Glycoproteomics [Technology development]

Year 2017

PubMed DOI Crossref
Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms.
Pandit S, Ravikumar V, Abdel-Haleem AM, ..., Westerlund F, Mijakovic I
Front Microbiol 8 (-) 2599 [2017-12-22; online 2017-12-22]
Glycoproteomics [Service]
PubMed DOI Crossref
Orellanine specifically targets renal clear cell carcinoma.
Buvall L, Hedman H, Khramova A, ..., Haraldsson B, Nyström J
Oncotarget 8 (53) 91085-91098 [2017-10-31; online 2017-07-25]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Glycoforest 1.0.
Horlacher O, Jin C, Alocci D, ..., Karlsson NG, Lisacek F
Anal. Chem. 89 (20) 10932-10940 [2017-10-17; online 2017-09-25]
Glycoproteomics [Technology development]
PubMed DOI Crossref
Lubricin binds cartilage proteins, cartilage oligomeric matrix protein, fibronectin and collagen II at the cartilage surface.
Flowers SA, Zieba A, Örnros J, ..., Kamali-Moghaddam M, Karlsson NG
Sci Rep 7 (1) 13149 [2017-10-13; online 2017-10-13]
Affinity Proteomics Uppsala [Collaborative] Glycoproteomics [Collaborative] PLA and Single Cell Proteomics [Collaborative]
PubMed DOI Crossref
Identification and characterization of the novel colonization factor CS30 based on whole genome sequencing in enterotoxigenic Escherichia coli (ETEC).
von Mentzer A, Tobias J, Wiklund G, ..., Sjöling Å, Svennerholm AM
Sci Rep 7 (1) 12514 [2017-10-02; online 2017-10-02]
Glycoproteomics [Service]
PubMed DOI Crossref
GlyTouCan: an accessible glycan structure repository.
Tiemeyer M, Aoki K, Paulson J, ..., Narimatsu H, Aoki-Kinoshita KF
Glycobiology 27 (10) 915-919 [2017-10-01; online 2017-09-20]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Transcriptomic and Proteomic Profiling Provides Insight into Mesangial Cell Function in IgA Nephropathy.
Liu P, Lassén E, Nair V, ..., Ebefors K, Nyström J
J. Am. Soc. Nephrol. 28 (10) 2961-2972 [2017-10-00; online 2017-06-23]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Cartilage oligomeric matrix protein neoepitope in the synovial fluid of horses with acute lameness: A new biomarker for the early stages of osteoarthritis.
Skiöldebrand E, Ekman S, Mattsson Hultén L, ..., Sihlbom C, Rüetschi U
Equine Vet. J. 49 (5) 662-667 [2017-09-00; online 2017-02-28]
Glycoproteomics [Service]
PubMed DOI Crossref
Cartilage oligomeric matrix protein forms protein complexes with synovial lubricin via non-covalent and covalent interactions.
Flowers SA, Kalamajski S, Ali L, ..., Karlsson NG, Jin C
Osteoarthr. Cartil. 25 (9) 1496-1504 [2017-09-00; online 2017-04-01]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Aeromonas salmonicida Growth in Response to Atlantic Salmon Mucins Differs between Epithelial Sites, Is Governed by Sialylated and N-Acetylhexosamine-Containing O-Glycans, and Is Affected by Ca2.
Padra JT, Sundh H, Sundell K, ..., Karlsson NG, Lindén SK
Infect. Immun. 85 (8) - [2017-08-00; online 2017-07-19]
Glycoproteomics [Service]
PubMed DOI Crossref
Dual action of bacteriocin PLNC8 αβ through inhibition of Porphyromonas gingivalis infection and promotion of cell proliferation.
Bengtsson T, Zhang B, Selegård R, ..., Aili D, Khalaf H
Pathog Dis 75 (5) - [2017-07-31; online 2017-06-13]
Glycoproteomics [Service]
PubMed DOI Crossref
D-methionine interferes with non-typeable Haemophilus influenzae peptidoglycan synthesis during growth and biofilm formation.
Dawe H, Berger E, Sihlbom C, ..., Faust SN, Allan RN
Microbiology (Reading, Engl.) 163 (7) 1093-1104 [2017-07-00; online 2017-07-21]
Glycoproteomics [Service]
PubMed DOI Crossref
Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.
Boulund F, Karlsson R, Gonzales-Siles L, ..., Moore ERB, Kristiansson E
Mol. Cell Proteomics 16 (6) 1052-1063 [2017-06-00; online 2017-04-18]
Glycoproteomics [Service]
PubMed DOI Crossref
Influence of Glycosylation on Interfacial Properties of Recombinant Mucins: Adsorption, Surface Forces, and Friction.
An J, Jin C, Dėdinaitė A, ..., Karlsson NG, Claesson PM
Langmuir 33 (18) 4386-4395 [2017-05-09; online 2017-04-26]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Structural Diversity of Human Gastric Mucin Glycans.
Jin C, Kenny DT, Skoog EC, ..., Lindén SK, Karlsson NG
Mol. Cell Proteomics 16 (5) 743-758 [2017-05-00; online 2017-05-04]
Affinity Proteomics Uppsala [Service] Glycoproteomics [Service] PLA and Single Cell Proteomics [Service]
PubMed DOI Crossref
High levels of the AR-V7 Splice Variant and Co-Amplification of the Golgi Protein Coding YIPF6 in AR Amplified Prostate Cancer Bone Metastases.
Djusberg E, Jernberg E, Thysell E, ..., Brattsand M, Wikström P
Prostate 77 (6) 625-638 [2017-05-00; online 2017-02-01]
Glycoproteomics [Service]
PubMed DOI Crossref
Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis.
Kalantari A, Chen T, Ji B, ..., Goelzer A, Mijakovic I
Front Microbiol 8 (-) 638 [2017-04-18; online 2017-04-18]
Glycoproteomics [Service]
PubMed DOI Crossref
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.
Liu Y, McBride R, Stoll M, ..., Feizi T, Smith DF
Glycobiology 27 (4) 280-284 [2017-04-00; online 2016-11-22]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Strain improvement of Pichia kudriavzevii TY13 for raised phytase production and reduced phosphate repression.
Qvirist L, Vorontsov E, Veide Vilg J, Andlid T
Microb Biotechnol 10 (2) 341-353 [2017-03-00; online 2016-10-28]
Glycoproteomics [Collaborative]
PubMed DOI Crossref
Overexpression of protein kinase STK25 in mice exacerbates ectopic lipid accumulation, mitochondrial dysfunction and insulin resistance in skeletal muscle.
Chursa U, Nuñez-Durán E, Cansby E, ..., Sihlbom C, Mahlapuu M
Diabetologia 60 (3) 553-567 [2017-03-00; online 2016-12-16]
Glycoproteomics [Service]
PubMed DOI Crossref
Anaesthetic-induced cardioprotection in an experimental model of the Takotsubo syndrome - isoflurane vs. propofol.
Oras J, Redfors B, Ali A, ..., Omerovic E, Ricksten SE
Acta Anaesthesiol Scand 61 (3) 309-321 [2017-03-00; online 2017-01-22]
Glycoproteomics [Service]
PubMed DOI Crossref
Characterization of Glycan Structures of Chondroitin Sulfate-Glycopeptides Facilitated by Sodium Ion-Pairing and Positive Mode LC-MS/MS.
Nilsson J, Noborn F, Gomez Toledo A, ..., Sihlbom C, Larson G
J. Am. Soc. Mass Spectrom. 28 (2) 229-241 [2017-02-00; online 2016-11-21]
Glycoproteomics [Technology development]
PubMed DOI Crossref
Proteomic analysis of enterotoxigenic Escherichia coli (ETEC) in neutral and alkaline conditions.
Gonzales-Siles L, Karlsson R, Kenny D, Karlsson A, Sjöling Å
BMC Microbiol. 17 (1) 11 [2017-01-07; online 2017-01-07]
Glycoproteomics [Service]
PubMed DOI Crossref
Proteomic analyses of limbic regions in neonatal male, female and androgen receptor knockout mice.
Zettergren A, Karlsson S, Studer E, ..., Sihlbom C, Westberg L
BMC Neurosci 18 (1) 9 [2017-01-05; online 2017-01-05]
Glycoproteomics [Service]

Year 2016

PubMed DOI Crossref
High-Throughput Analysis of the Plasma N-Glycome by UHPLC.
Adamczyk B, Stöckmann H, O'Flaherty R, Karlsson NG, Rudd PM
Methods Mol. Biol. 1503 (-) 97-108 [2016-10-16; online 2016-10-16]
Glycoproteomics [Technology development]
PubMed DOI Crossref
Databases and Associated Tools for Glycomics and Glycoproteomics.
Lisacek F, Mariethoz J, Alocci D, ..., Jin C, Karlsson NG
Methods Mol. Biol. 1503 (-) 235-264 [2016-10-16; online 2016-10-16]
Glycoproteomics [Collaborative]
SciLifeLab Data Centre
Publications 9.5.0