SciLifeLab Infrastructure Unit Since 2021.

Started: 2021

Ended: Current

85 publications

Year 2020

Exosomes influence the behavior of human mesenchymal stem cells on titanium surfaces.
Wang X, Shah FA, Vazirisani F, ..., Ekström K, Thomsen P
pii: S0142-9612(19)30670-2
Biomaterials 230 (-) 119571 [2020-02-00; online 2019-10-24]
Glycoproteomics [Service]
Molecular mechanisms of collateral sensitivity to the antibiotic nitrofurantoin.
Roemhild R, Linkevicius M, Andersson DI
pii: PBIOLOGY-D-19-02723
PLoS Biol. 18 (1) e3000612 [2020-01-27; online 2020-01-27]
Glycoproteomics [Service]
Evolution of a new function by fusion between phage DNA and a bacterial gene.
Warsi O, Knopp M, Surkov S, Hultqvist JJ, Andersson DI
pii: 5707441
Mol. Biol. Evol. - (-) - [2020-01-16; online 2020-01-16]
Glycoproteomics [Service]
Proteomic analysis of follicular fluid during human ovulation.
Zakerkish F, Brännström M, Carlsohn E, ..., van der Post S, Thoroddsen A
Acta Obstet Gynecol Scand - (-) - [2020-01-16; online 2020-01-16]
Glycoproteomics [Service]

Year 2019

Protein Paucimannosylation Is an Enriched N-Glycosylation Signature of Human Cancers.
Chatterjee S, Lee LY, Kawahara R, ..., Palmisano G, Thaysen-Andersen M
Proteomics 19 (21-22) e1900010 [2019-11-00; online 2019-10-16]
Glycoproteomics [Collaborative]
DPI Selectively Inhibits Intracellular NADPH Oxidase Activity in Human Neutrophils.
Buck A, Sanchez Klose FP, Venkatakrishnan V, ..., Christenson K, Bylund J
pii: 3/10/488
Immunohorizons 3 (10) 488-497 [2019-10-18; online 2019-10-18]
Glycoproteomics [Service]
Protein prenylation restrains innate immunity by inhibiting Rac1 effector interactions.
Akula MK, Ibrahim MX, Ivarsson EG, ..., Sayin VI, Bergo MO
pii: 10.1038/s41467-019-11606-x pmc: PMC6726657
Nat Commun 10 (1) 3975 [2019-09-04; online 2019-09-04]
Glycoproteomics [Service]
Glycosylation influences activity, stability and immobilization of the feruloyl esterase 1a from Myceliophthora thermophila.
Bonzom C, Hüttner S, Mirgorodskaya E, ..., Verhaert RMD, Olsson L
pii: 10.1186/s13568-019-0852-z pmc: PMC6691016
AMB Express 9 (1) 126 [2019-08-12; online 2019-08-12]
Glycoproteomics [Collaborative]
Role of apolipoprotein C-III overproduction in diabetic dyslipidaemia.
Adiels M, Taskinen MR, Björnson E, ..., Packard C, Borén J
Diabetes Obes Metab 21 (8) 1861-1870 [2019-08-00; online 2019-05-08]
Glycoproteomics [Service]
Distinct glycosylation in membrane proteins within neonatal versus adult myocardial tissue.
Contessotto P, Ellis BW, Jin C, ..., Kilcoyne M, Pandit A
pii: S0945-053X(19)30045-9
Matrix Biol. - (-) - [2019-05-17; online 2019-05-17]
Glycoproteomics [Service]
Identification of a non-canonical chondroitin sulfate linkage region trisaccharide.
Persson A, Nilsson J, Vorontsov E, Noborn F, Larson G
pii: 5368387
Glycobiology 29 (5) 366-371 [2019-05-01; online 2019-03-03]
Glycoproteomics [Collaborative]
FET family fusion oncoproteins target the SWI/SNF chromatin remodeling complex.
Lindén M, Thomsen C, Grundevik P, ..., Ståhlberg A, Åman P
pii: embr.201845766 pmc: PMC6500973
EMBO Rep. 20 (5) - [2019-05-00; online 2019-04-08]
Glycoproteomics [Service]
Helicobacter suis infection alters glycosylation and decreases the pathogen growth inhibiting effect and binding avidity of gastric mucins.
Padra M, Adamczyk B, Flahou B, ..., Karlsson NG, Lindén SK
pii: 10.1038/s41385-019-0154-4
Mucosal Immunol 12 (3) 784-794 [2019-05-00; online 2019-03-07]
Glycoproteomics [Service]
Univariate and classification analysis reveals potential diagnostic biomarkers for early stage ovarian cancer Type 1 and Type 2.
Marcišauskas S, Ulfenborg B, Kristjansdottir B, Waldemarson S, Sundfeldt K
pii: S1874-3919(19)30025-9
J Proteomics 196 (-) 57-68 [2019-03-30; online 2019-01-30]
Glycoproteomics [Service]
GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.
Alocci D, Mariethoz J, Gastaldello A, ..., Packer NH, Lisacek F
J. Proteome Res. 18 (2) 664-677 [2019-02-01; online 2019-01-15]
Glycoproteomics [Collaborative]
The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli.
Joffre E, Nicklasson M, Álvarez-Carretero S, ..., Zhu B, Sjöling Å
pii: 10.1038/s41598-018-36414-z pmc: PMC6331568
Sci Rep 9 (1) 108 [2019-01-14; online 2019-01-14]
Glycoproteomics [Service]

Year 2018

Glycomics@ExPASy: Bridging the Gap.
Mariethoz J, Alocci D, Gastaldello A, ..., Packer NH, Lisacek F
pii: RA118.000799 pmc: PMC6210229
Mol. Cell Proteomics 17 (11) 2164-2176 [2018-11-00; online 2018-08-10]
Glycoproteomics [Collaborative]
Copper Chaperone Atox1 Interacts with Cell Cycle Proteins.
Matson Dzebo M, Blockhuys S, Valenzuela S, ..., Esbjörner EK, Wittung-Stafshede P
pii: S2001-0370(18)30138-7 pmc: PMC6231052
Computational and Structural Biotechnology Journal 16 (-) 443-449 [2018-10-31; online 2018-10-31]
Glycoproteomics [Service]
Amplification of the Melanocortin-1 Receptor in Nephrotic Syndrome Identifies a Target for Podocyte Cytoskeleton Stabilization.
Bergwall L, Wallentin H, Elvin J, ..., Nyström J, Buvall L
pii: 10.1038/s41598-018-34004-7 pmc: PMC6200758
Sci Rep 8 (1) 15731 [2018-10-24; online 2018-10-24]
Glycoproteomics [Collaborative]
BabA-mediated adherence of pediatric ulcerogenic H. pylori strains to gastric mucins at neutral and acidic pH.
Quintana-Hayashi MP, Rocha R, Padra M, ..., Oleastro M, Lindén SK
Virulence 9 (1) 1699-1717 [2018-10-10; online 2018-10-10]
Glycoproteomics [Service]
Pharmacokinetic Properties of the Nephrotoxin Orellanine in Rats.
Najar D, Haraldsson B, Thorsell A, ..., Nyström J, Ebefors K
pii: toxins10080333 pmc: PMC6116018
Toxins (Basel) 10 (8) - [2018-08-17; online 2018-08-17]
Glycoproteomics [Service]
A bacteriophage enzyme induces bacterial metabolic perturbation that confers a novel promiscuous function.
Jerlström Hultqvist J, Warsi O, Söderholm A, ..., Selmer M, Andersson DI
pii: 10.1038/s41559-018-0568-5
Nat Ecol Evol 2 (8) 1321-1330 [2018-08-00; online 2018-05-28]
Glycoproteomics [Collaborative]
Sample handling of gastric tissue and O-glycan alterations in paired gastric cancer and non-tumorigenic tissues.
Adamczyk B, Jin C, Polom K, ..., Roviello F, Karlsson NG
pii: 10.1038/s41598-017-18299-6 pmc: PMC5762837
Sci Rep 8 (1) 242 [2018-01-10; online 2018-01-10]
Glycoproteomics [Technology development]

Year 2017

Orellanine specifically targets renal clear cell carcinoma.
Buvall L, Hedman H, Khramova A, ..., Haraldsson B, Nyström J
pii: 19555 pmc: PMC5710908
Oncotarget 8 (53) 91085-91098 [2017-10-31; online 2017-07-25]
Glycoproteomics [Collaborative]
Glycoforest 1.0.
Horlacher O, Jin C, Alocci D, ..., Karlsson NG, Lisacek F
Anal. Chem. 89 (20) 10932-10940 [2017-10-17; online 2017-09-25]
Glycoproteomics [Technology development]
GlyTouCan: an accessible glycan structure repository.
Tiemeyer M, Aoki K, Paulson J, ..., Narimatsu H, Aoki-Kinoshita KF
pii: 4079955 pmc: PMC5881658
Glycobiology 27 (10) 915-919 [2017-10-01; online 2017-09-20]
Glycoproteomics [Collaborative]
Cartilage oligomeric matrix protein forms protein complexes with synovial lubricin via non-covalent and covalent interactions.
Flowers SA, Kalamajski S, Ali L, ..., Karlsson NG, Jin C
pii: S1063-4584(17)30937-8
Osteoarthr. Cartil. 25 (9) 1496-1504 [2017-09-00; online 2017-04-01]
Glycoproteomics [Collaborative]
Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.
Boulund F, Karlsson R, Gonzales-Siles L, ..., Moore ERB, Kristiansson E
pii: M116.061721 pmc: PMC5461537
Mol. Cell Proteomics 16 (6) 1052-1063 [2017-06-00; online 2017-04-18]
Glycoproteomics [Service]
Structural Diversity of Human Gastric Mucin Glycans.
Jin C, Kenny DT, Skoog EC, ..., Lindén SK, Karlsson NG
pii: 16/5/743 pmc: PMC5417818
Mol. Cell Proteomics 16 (5) 743-758 [2017-05-00; online 2017-05-04]
Glycoproteomics [Service] PLA and Single Cell Proteomics [Service]
Proteomic analysis of enterotoxigenic Escherichia coli (ETEC) in neutral and alkaline conditions.
Gonzales-Siles L, Karlsson R, Kenny D, Karlsson A, Sjöling Å
pii: 10.1186/s12866-016-0914-1 pmc: PMC5219706
BMC Microbiol. 17 (1) 11 [2017-01-07; online 2017-01-07]
Glycoproteomics [Service]
Proteomic analyses of limbic regions in neonatal male, female and androgen receptor knockout mice.
Zettergren A, Karlsson S, Studer E, ..., Sihlbom C, Westberg L
pii: 10.1186/s12868-016-0332-1 pmc: PMC5217640
BMC Neurosci 18 (1) 9 [2017-01-05; online 2017-01-05]
Glycoproteomics [Service]

Year 2016

Databases and Associated Tools for Glycomics and Glycoproteomics.
Lisacek F, Mariethoz J, Alocci D, ..., Jin C, Karlsson NG
Methods Mol. Biol. 1503 (-) 235-264 [2016-10-16; online 2016-10-16]
Glycoproteomics [Collaborative]
High-Throughput Analysis of the Plasma N-Glycome by UHPLC.
Adamczyk B, Stöckmann H, O'Flaherty R, Karlsson NG, Rudd PM
Methods Mol. Biol. 1503 (-) 97-108 [2016-10-16; online 2016-10-16]
Glycoproteomics [Technology development]