Glycoproteomics

In vivo Profiling of the Alk Proximitome in the Developing Drosophila Brain.

Uçkun E, Wolfstetter G, Anthonydhason V, ..., Fuchs J, Palmer RH

J. Mol. Biol. 433 (23) 167282 [2021-11-19; online 2021-10-06]

Platelet proteome and function in X-linked thrombocytopenia with thalassemia and <i>in silico</i> comparisons with gray platelet syndrome.

Bergemalm D, Ramström S, Kardeby C, ..., Palmblad J, Åström M

Haematologica 106 (11) 2947-2959 [2021-11-01; online 2021-11-01]

Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.

Kawahara R, Chernykh A, Alagesan K, ..., Packer NH, Thaysen-Andersen M

Nat. Methods 18 (11) 1304-1316 [2021-11-00; online 2021-11-01]

A Glycoproteomic Approach to Identify Novel Proteoglycans.

Noborn F, Nikpour M, Persson A, ..., Nilsson J, Larson G

Methods Mol. Biol. 2303 (-) 71-85 [2021-10-10; online 2021-10-10]

Proteomic analysis in diffuse large B-cell lymphoma identifies dysregulated tumor microenvironment proteins in non-GCB/ABC subtype patients.

Bram Ednersson S, Stern M, Fagman H, ..., Thorsell A, Andersson PO

Leuk. Lymphoma 62 (10) 2360-2373 [2021-10-00; online 2021-06-11]

Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Glycoproteomics [Service]

A single sulfatase is required to access colonic mucin by a gut bacterium.

Luis AS, Jin C, Pereira GV, ..., Cartmell A, Martens EC

Nature 598 (7880) 332-337 [2021-10-00; online 2021-10-06]

Sulfation of O-glycans on Mucin-type Proteins From Serous Ovarian Epithelial Tumors.

Thomsson KA, Vitiazeva V, Mateoiu C, ..., Sundfeldt K, Karlsson NG

Mol. Cell Proteomics 20 (-) 100150 [2021-09-21; online 2021-09-21]

Proteoglycan profiling of human, rat and mouse insulin-secreting cells.

Nikpour M, Nilsson J, Persson A, ..., Vorontsov E, Larson G

Glycobiology 31 (8) 916-930 [2021-09-09; online 2021-05-18]

Proteomic characterisation of polyglucosan bodies in skeletal muscle in RBCK1 deficiency.

Thomsen C, Malfatti E, Jovanovic A, ..., Lindberg C, Oldfors A

Neuropathol Appl Neurobiol - (-) - [2021-08-17; online 2021-08-17]

Expanding the Chondroitin Sulfate Glycoproteome - But How Far?

Noborn F, Nikpour M, Persson A, Nilsson J, Larson G

Front Cell Dev Biol 9 (-) 695970 [2021-08-13; online 2021-08-13]

Quantitative proteomic analysis to identify differentially expressed proteins in patients with epilepsy.

Banote RK, Larsson D, Berger E, Kumlien E, Zelano J

Epilepsy Res 174 (-) 106674 [2021-08-00; online 2021-05-15]

Effects of liraglutide on the metabolism of triglyceride-rich lipoproteins in type 2 diabetes.

Taskinen MR, Björnson E, Matikainen N, ..., Packard CJ, Borén J

Diabetes Obes Metab 23 (5) 1191-1201 [2021-05-00; online 2021-03-05]

CA10 regulates neurexin heparan sulfate addition via a direct binding in the secretory pathway.

Montoliu-Gaya L, Tietze D, Kaminski D, ..., Tietze AA, Sterky FH

EMBO Rep. 22 (4) e51349 [2021-04-07; online 2021-02-15]

Glycoproteomics [Collaborative] Swedish NMR Centre (SNC) [Service]

Domain Mapping of Chondroitin/Dermatan Sulfate Glycosaminoglycans Enables Structural Characterization of Proteoglycans.

Persson A, Nikpour M, Vorontsov E, Nilsson J, Larson G

Mol. Cell Proteomics 20 (-) 100074 [2021-03-20; online 2021-03-20]

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast.

Yu R, Vorontsov E, Sihlbom C, Nielsen J

Elife 10 (-) - [2021-03-15; online 2021-03-15]

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae.

Sánchez BJ, Lahtvee PJ, Campbell K, ..., Zelezniak A, Nielsen J

Proteomics 21 (6) e2000093 [2021-03-00; online 2021-02-23]

Elastin-like recombinamers-based hydrogel modulates post-ischemic remodeling in a non-transmural myocardial infarction in sheep.

Contessotto P, Orbanić D, Da Costa M, ..., Rodríguez-Cabello JC, Pandit A

Sci Transl Med 13 (581) - [2021-02-17; online 2021-02-19]

ALK ligand ALKAL2 potentiates MYCN-driven neuroblastoma in the absence of ALK mutation.

Borenäs M, Umapathy G, Lai WY, ..., Hallberg B, Palmer RH

EMBO J. 40 (3) e105784 [2021-02-01; online 2021-01-07]

Elastin-like hydrogel stimulates angiogenesis in a severe model of critical limb ischemia (CLI): An insight into the glyco-host response.

Marsico G, Jin C, Abbah SA, ..., McCullagh KJA, Pandit A

Biomaterials 269 (-) 120641 [2021-02-00; online 2021-01-04]

Effects of Evolocumab on the Postprandial Kinetics of Apo (Apolipoprotein) B100- and B48-Containing Lipoproteins in Subjects With Type 2 Diabetes.

Taskinen MR, Björnson E, Kahri J, ..., Packard CJ, Borén J

Arterioscler. Thromb. Vasc. Biol. 41 (2) 962-975 [2021-02-00; online 2020-12-24]

Telomeric double-strand DNA-binding proteins DTN-1 and DTN-2 ensure germline immortality in Caenorhabditis elegans.

Yamamoto I, Zhang K, Zhang J, Vorontsov E, Shibuya H

Elife 10 (-) - [2021-01-21; online 2021-01-21]

Embryo-Like Features in Developing Bacillus subtilis Biofilms.

Futo M, Opašić L, Koska S, ..., Mijakovic I, Domazet-Lošo T

Mol. Biol. Evol. 38 (1) 31-47 [2021-01-04; online 2020-09-02]

The structure of enteric human adenovirus 41-A leading cause of diarrhea in children.

Rafie K, Lenman A, Fuchs J, ..., Arnberg N, Carlson LA

Sci Adv 7 (2) eabe0974 [2021-01-00; online 2021-01-08]

Cryo-EM [Service] Glycoproteomics [Service]

A novel type of colistin resistance genes selected from random sequence space.

Knopp M, Babina AM, Gudmundsdóttir JS, ..., Trent MS, Andersson DI

PLoS Genet. 17 (1) e1009227 [2021-01-00; online 2021-01-07]

Year 2020

Proteomic analysis of follicular fluid during human ovulation.

Zakerkish F, Brännström M, Carlsohn E, ..., van der Post S, Thoroddsen A

Acta Obstet Gynecol Scand 99 (7) 917-924 [2020-07-00; online 2020-04-07]

Evolution of a New Function by Fusion between Phage DNA and a Bacterial Gene.

Warsi O, Knopp M, Surkov S, Jerlström Hultqvist J, Andersson DI

Mol. Biol. Evol. 37 (5) 1329-1341 [2020-05-01; online 2020-01-25]

Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping.

Karlsson R, Thorsell A, Gomila M, ..., Kristiansson E, Moore ERB

Mol. Cell Proteomics 19 (3) 518-528 [2020-03-00; online 2020-01-15]

Glycogenin is Dispensable for Glycogen Synthesis in Human Muscle, and Glycogenin Deficiency Causes Polyglucosan Storage.

Visuttijai K, Hedberg-Oldfors C, Thomsen C, ..., Roach P, Oldfors A

J. Clin. Endocrinol. Metab. 105 (2) 557-566 [2020-02-01; online 2019-10-20]

Exosomes influence the behavior of human mesenchymal stem cells on titanium surfaces.

Wang X, Shah FA, Vazirisani F, ..., Ekström K, Thomsen P

Biomaterials 230 (-) 119571 [2020-02-00; online 2019-10-24]

NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods.

De Leoz MLA, Duewer DL, Fung A, ..., Yuan H, Stein SE

Mol. Cell Proteomics 19 (1) 11-30 [2020-01-00; online 2019-10-07]

Molecular mechanisms of collateral sensitivity to the antibiotic nitrofurantoin.

Roemhild R, Linkevicius M, Andersson DI

PLoS Biol. 18 (1) e3000612 [2020-01-00; online 2020-01-27]

Year 2019

Structural and biochemical studies of the glucuronoyl esterase OtCE15A illuminate its interaction with lignocellulosic components.

Mazurkewich S, Poulsen JN, Lo Leggio L, Larsbrink J

J. Biol. Chem. 294 (52) 19978-19987 [2019-12-27; online 2019-11-18]

Lipid Droplet-Associated Kinase STK25 Regulates Peroxisomal Activity and Metabolic Stress Response in Steatotic Liver.

Nerstedt A, Kurhe Y, Cansby E, ..., Hoy AJ, Mahlapuu M

J. Lipid Res. - (-) - [2019-12-19; online 2019-12-19]

Apolipoprotein B48 metabolism in chylomicrons and very low-density lipoproteins and its role in triglyceride transport in normo- and hypertriglyceridemic human subjects.

Björnson E, Packard CJ, Adiels M, ..., Taskinen MR, Borén J

J. Intern. Med. - (-) - [2019-12-17; online 2019-12-17]

Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma

Jang SC, Crescitelli R, Cvjetkovic A, ..., Kalluri R, Lötvall J

J Extracell Vesicles 8 (1) 1635420 [2019-12-01; online 2019-08-27]

Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]

Endosomal signalling via exosome surface TGFβ-1

Shelke GV, Yin Y, Jang SC, ..., Nilsson JA, Lötvall J

J Extracell Vesicles 8 (1) 1650458 [2019-12-01; online 2019-09-20]

Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service] Integrated Microscopy Technologies Stockholm

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

Rojas-Macias MA, Mariethoz J, Andersson P, ..., Lisacek F, Karlsson NG

Nat Commun 10 (1) - [2019-12-00; online 2019-07-22]

Bioinformatics Support and Infrastructure [Technology development] Bioinformatics Support, Infrastructure and Training [Technology development] Glycoproteomics [Technology development]

Protein Paucimannosylation Is an Enriched N-Glycosylation Signature of Human Cancers.

Chatterjee S, Lee LY, Kawahara R, ..., Palmisano G, Thaysen-Andersen M

Proteomics 19 (21-22) e1900010 [2019-11-00; online 2019-10-16]

Mice exposed to maternal androgen excess and diet-induced obesity have altered phosphorylation of catechol-O-methyltransferase in the placenta and fetal liver.

Fornes R, Manti M, Qi X, ..., Benrick A, Stener-Victorin E

Int J Obes (Lond) 43 (11) 2176-2188 [2019-11-00; online 2019-01-22]

DPI Selectively Inhibits Intracellular NADPH Oxidase Activity in Human Neutrophils.

Buck A, Sanchez Klose FP, Venkatakrishnan V, ..., Christenson K, Bylund J

Immunohorizons 3 (10) 488-497 [2019-10-18; online 2019-10-18]

Reduced sialyl-Lewisx on salivary MUC7 from patients with burning mouth syndrome.

Acharya S, Jin C, Bylund J, ..., Carlén A, Karlsson NG

Mol Omics 15 (5) 331-339 [2019-10-07; online 2019-08-16]

Glycoproteomics [Collaborative] PLA and Single Cell Proteomics [Collaborative]

Upregulation of PBP1B and LpoB in cysB Mutants Confers Mecillinam (Amdinocillin) Resistance in Escherichia coli.

Thulin E, Andersson DI

Antimicrob. Agents Chemother. 63 (10) - [2019-10-00; online 2019-09-23]

Discovery and development of substituted thiadiazoles as inhibitors of Staphylococcus aureus Sortase A

Wehrli PM, Uzelac I, Olsson T, ..., Tietze D, Gottfries J

Bioorganic & Medicinal Chemistry 27 (19) 115043 [2019-10-00; online 2019-10-00]

Chemical Biology Consortium Sweden (CBCS) [Service] Glycoproteomics [Service] Swedish NMR Centre (SNC) [Service]

Protein prenylation restrains innate immunity by inhibiting Rac1 effector interactions.

Akula MK, Ibrahim MX, Ivarsson EG, ..., Sayin VI, Bergo MO

Nat Commun 10 (1) 3975 [2019-09-04; online 2019-09-04]

Protein kinase MST3 modulates lipid homeostasis in hepatocytes and correlates with nonalcoholic steatohepatitis in humans.

Cansby E, Kulkarni NM, Magnusson E, ..., Blüher M, Mahlapuu M

FASEB J. 33 (9) 9974-9989 [2019-09-00; online 2019-06-07]

Separation of Isomeric O-Glycans by Ion Mobility and Liquid Chromatography-Mass Spectrometry.

Jin C, Harvey DJ, Struwe WB, Karlsson NG

Anal. Chem. 91 (16) 10604-10613 [2019-08-20; online 2019-08-01]

Glycosylation influences activity, stability and immobilization of the feruloyl esterase 1a from Myceliophthora thermophila.

Bonzom C, Hüttner S, Mirgorodskaya E, ..., Verhaert RMD, Olsson L

AMB Express 9 (1) 126 [2019-08-12; online 2019-08-12]

Deciphering Isomers with a Multiple Reaction Monitoring Method for the Complete Detectable O-Glycan Repertoire of the Candidate Therapeutic, Lubricin.

Flowers SA, Lane CS, Karlsson NG

Anal. Chem. 91 (15) 9819-9827 [2019-08-06; online 2019-07-11]

Role of apolipoprotein C-III overproduction in diabetic dyslipidaemia.

Adiels M, Taskinen MR, Björnson E, ..., Packard C, Borén J

Diabetes Obes Metab 21 (8) 1861-1870 [2019-08-00; online 2019-05-08]

A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancer.

Shen Q, Polom K, Williams C, ..., Roviello F, Kamali-Moghaddam M

EBioMedicine 44 (-) 322-333 [2019-06-00; online 2019-05-28]

Bioinformatics Compute and Storage [Service] Clinical Biomarkers [Service] Glycoproteomics [Collaborative] PLA and Single Cell Proteomics [Technology development]

Distinct glycosylation in membrane proteins within neonatal versus adult myocardial tissue.

Contessotto P, Ellis BW, Jin C, ..., Kilcoyne M, Pandit A

Matrix Biol. - (-) - [2019-05-17; online 2019-05-17]

Identification of a non-canonical chondroitin sulfate linkage region trisaccharide.

Persson A, Nilsson J, Vorontsov E, Noborn F, Larson G

Glycobiology 29 (5) 366-371 [2019-05-01; online 2019-03-03]

Investigation of human apoB48 metabolism using a new, integrated non-steady-state model of apoB48 and apoB100 kinetics.

Björnson E, Packard CJ, Adiels M, ..., Taskinen MR, Borén J

J. Intern. Med. 285 (5) 562-577 [2019-05-00; online 2019-03-12]

Helicobacter suis infection alters glycosylation and decreases the pathogen growth inhibiting effect and binding avidity of gastric mucins.

Padra M, Adamczyk B, Flahou B, ..., Karlsson NG, Lindén SK

Mucosal Immunol 12 (3) 784-794 [2019-05-00; online 2019-03-07]

FET family fusion oncoproteins target the SWI/SNF chromatin remodeling complex.

Lindén M, Thomsen C, Grundevik P, ..., Ståhlberg A, Åman P

EMBO Rep. 20 (5) - [2019-05-00; online 2019-04-08]

Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells.

Masoumi Z, Maes GE, Herten K, ..., Familari M, Hansson SR

Int J Mol Sci 20 (8) - [2019-04-25; online 2019-04-25]

Exploring the Arctic Charr Intestinal Glycome: Evidence of Increased N-Glycolylneuraminic Acid Levels and Changed Host-Pathogen Interactions in Response to Inflammation.

Venkatakrishnan V, Padra JT, Sundh H, ..., Karlsson NG, Lindén SK

J. Proteome Res. 18 (4) 1760-1773 [2019-04-05; online 2019-03-19]

Univariate and classification analysis reveals potential diagnostic biomarkers for early stage ovarian cancer Type 1 and Type 2.

Marcišauskas S, Ulfenborg B, Kristjansdottir B, Waldemarson S, Sundfeldt K

J Proteomics 196 (-) 57-68 [2019-03-30; online 2019-01-30]

Recombinant Glycoprotein E of Varicella Zoster Virus Contains Glycan-Peptide Motifs That Modulate B Cell Epitopes into Discrete Immunological Signatures.

Nordén R, Nilsson J, Samuelsson E, ..., Olofsson S, Bergström T

Int J Mol Sci 20 (4) - [2019-02-22; online 2019-02-22]

GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

Alocci D, Mariethoz J, Gastaldello A, ..., Packer NH, Lisacek F

J. Proteome Res. 18 (2) 664-677 [2019-02-01; online 2019-01-15]

The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli.

Joffre E, Nicklasson M, Álvarez-Carretero S, ..., Zhu B, Sjöling Å

Sci Rep 9 (1) 108 [2019-01-14; online 2019-01-14]

Year 2018

Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics.

Karlsson R, Gonzales-Siles L, Gomila M, ..., Kristiansson E, Moore ERB

PLoS ONE 13 (12) e0208804 [2018-12-10; online 2018-12-10]

A novel ulvan lyase family with broad-spectrum activity from the ulvan utilisation loci of Formosa agariphila KMM 3901

Konasani VR, Jin C, Karlsson NG, Albers E

Sci Rep 8 (1) - [2018-12-00; online 2018-10-02]

Glycoproteomics [Service] Swedish NMR Centre (SNC) [Service]

Isomeric Separation and Recognition of Anionic and Zwitterionic N-glycans from Royal Jelly Glycoproteins.

Hykollari A, Malzl D, Eckmair B, ..., Wilson IBH, Paschinger K

Mol. Cell Proteomics 17 (11) 2177-2196 [2018-11-00; online 2018-08-13]

Glycomics@ExPASy: Bridging the Gap.

Mariethoz J, Alocci D, Gastaldello A, ..., Packer NH, Lisacek F

Mol. Cell Proteomics 17 (11) 2164-2176 [2018-11-00; online 2018-08-10]

Copper Chaperone Atox1 Interacts with Cell Cycle Proteins.

Matson Dzebo M, Blockhuys S, Valenzuela S, ..., Esbjörner EK, Wittung-Stafshede P

Computational and Structural Biotechnology Journal 16 (-) 443-449 [2018-10-31; online 2018-10-31]

Detection of post-translational modifications using solid-phase proximity ligation assay.

Oliveira FMS, Mereiter S, Lönn P, ..., Reis CA, Kamali-Moghaddam M

N Biotechnol 45 (-) 51-59 [2018-10-25; online 2017-10-31]

Glycoproteomics [Technology development] PLA and Single Cell Proteomics [Technology development]

Amplification of the Melanocortin-1 Receptor in Nephrotic Syndrome Identifies a Target for Podocyte Cytoskeleton Stabilization.

Bergwall L, Wallentin H, Elvin J, ..., Nyström J, Buvall L

Sci Rep 8 (1) 15731 [2018-10-24; online 2018-10-24]

Identification of Potential Plasma Biomarkers for Abdominal Aortic Aneurysm Using Tandem Mass Tag Quantitative Proteomics.

Henriksson AE, Lindqvist M, Sihlbom C, Bergström J, Bylund D

Proteomes 6 (4) - [2018-10-18; online 2018-10-18]

BabA-mediated adherence of pediatric ulcerogenic H. pylori strains to gastric mucins at neutral and acidic pH.

Quintana-Hayashi MP, Rocha R, Padra M, ..., Oleastro M, Lindén SK

Virulence 9 (1) 1699-1717 [2018-10-10; online 2018-10-10]

Higher Energy Collisional Dissociation Mass Spectrometry of Sulfated O-Linked Oligosaccharides.

Issa SMA, Vitiazeva V, Hayes CA, Karlsson NG

J. Proteome Res. 17 (9) 3259-3267 [2018-09-07; online 2018-08-13]

The Thomsen-Friedenreich Antigen: A Highly Sensitive and Specific Predictor of Microsatellite Instability in Gastric Cancer.

Mereiter S, Polom K, Williams C, ..., Magalhães A, Reis CA

J Clin Med 7 (9) - [2018-09-05; online 2018-09-05]

Pharmacokinetic Properties of the Nephrotoxin Orellanine in Rats.

Najar D, Haraldsson B, Thorsell A, ..., Nyström J, Ebefors K

Toxins (Basel) 10 (8) - [2018-08-17; online 2018-08-17]

Detailed analysis of the plasma extracellular vesicle proteome after separation from lipoproteins

Karimi N, Cvjetkovic A, Jang SC, ..., Lötvall J, Lässer C

Cell. Mol. Life Sci. 75 (15) 2873-2886 [2018-08-00; online 2018-02-13]

Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]

A bacteriophage enzyme induces bacterial metabolic perturbation that confers a novel promiscuous function.

Jerlström Hultqvist J, Warsi O, Söderholm A, ..., Selmer M, Andersson DI

Nat Ecol Evol 2 (8) 1321-1330 [2018-08-00; online 2018-05-28]

Effective Assignment of α2,3/α2,6-Sialic Acid Isomers by LC-MS/MS-Based Glycoproteomics.

Pett C, Nasir W, Sihlbom C, ..., Nilsson J, Westerlind U

Angew. Chem. Int. Ed. Engl. 57 (30) 9320-9324 [2018-07-20; online 2018-06-20]

LC-MS/MS characterization of xyloside-primed glycosaminoglycans with cytotoxic properties reveals structural diversity and novel glycan modifications.

Persson A, Gomez Toledo A, Vorontsov E, ..., Nilsson J, Larson G

J. Biol. Chem. 293 (26) 10202-10219 [2018-06-29; online 2018-05-08]

Expression of ribosomal and actin network proteins and immunochemotherapy resistance in diffuse large B cell lymphoma patients

Bram Ednersson S, Stenson M, Stern M, ..., Hasselblom S, Andersson PO

Br J Haematol 181 (6) 770-781 [2018-06-00; online 2018-05-16]

Glycoproteomics [Service] Integrated Microscopy Technologies Gothenburg [Service]

Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award.

Mirgorodskaya E, Karlsson NG, Sihlbom C, Larson G, Nilsson CL

J. Am. Soc. Mass Spectrom. 29 (6) 1065-1074 [2018-06-00; online 2018-04-11]

Identification of Potential MR-Derived Biomarkers for Tumor Tissue Response to 177Lu-Octreotate Therapy in an Animal Model of Small Intestine Neuroendocrine Tumor.

Montelius M, Spetz J, Jalnefjord O, ..., Ljungberg M, Forssell-Aronsson E

Transl Oncol 11 (2) 193-204 [2018-04-00; online 2018-01-11]

Innate immune alterations are elicited in microglial cells before plaque deposition in the Alzheimer's disease mouse model 5xFAD.

Boza-Serrano A, Yang Y, Paulus A, Deierborg T

Sci Rep 8 (1) 1550 [2018-01-24; online 2018-01-24]

The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators.

Jers C, Ravikumar V, Lezyk M, ..., Wai SN, Mijakovic I

Front. Cell. Infect. Microbiol. 7 (-) 537 [2018-01-11; online 2018-01-11]

Sample handling of gastric tissue and O-glycan alterations in paired gastric cancer and non-tumorigenic tissues.

Adamczyk B, Jin C, Polom K, ..., Roviello F, Karlsson NG

Sci Rep 8 (1) 242 [2018-01-10; online 2018-01-10]

Year 2017

Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms.

Pandit S, Ravikumar V, Abdel-Haleem AM, ..., Westerlund F, Mijakovic I

Front Microbiol 8 (-) 2599 [2017-12-22; online 2017-12-22]

Orellanine specifically targets renal clear cell carcinoma.

Buvall L, Hedman H, Khramova A, ..., Haraldsson B, Nyström J

Oncotarget 8 (53) 91085-91098 [2017-10-31; online 2017-07-25]

Glycoforest 1.0.

Horlacher O, Jin C, Alocci D, ..., Karlsson NG, Lisacek F

Anal. Chem. 89 (20) 10932-10940 [2017-10-17; online 2017-09-25]

Lubricin binds cartilage proteins, cartilage oligomeric matrix protein, fibronectin and collagen II at the cartilage surface.

Flowers SA, Zieba A, Örnros J, ..., Kamali-Moghaddam M, Karlsson NG

Sci Rep 7 (1) 13149 [2017-10-13; online 2017-10-13]

Glycoproteomics [Collaborative] PLA and Single Cell Proteomics [Collaborative]

Identification and characterization of the novel colonization factor CS30 based on whole genome sequencing in enterotoxigenic Escherichia coli (ETEC).

von Mentzer A, Tobias J, Wiklund G, ..., Sjöling Å, Svennerholm AM

Sci Rep 7 (1) 12514 [2017-10-02; online 2017-10-02]

GlyTouCan: an accessible glycan structure repository.

Tiemeyer M, Aoki K, Paulson J, ..., Narimatsu H, Aoki-Kinoshita KF

Glycobiology 27 (10) 915-919 [2017-10-01; online 2017-09-20]

Transcriptomic and Proteomic Profiling Provides Insight into Mesangial Cell Function in IgA Nephropathy.

Liu P, Lassén E, Nair V, ..., Ebefors K, Nyström J

J. Am. Soc. Nephrol. 28 (10) 2961-2972 [2017-10-00; online 2017-06-23]

Cartilage oligomeric matrix protein neoepitope in the synovial fluid of horses with acute lameness: A new biomarker for the early stages of osteoarthritis.

Skiöldebrand E, Ekman S, Mattsson Hultén L, ..., Sihlbom C, Rüetschi U

Equine Vet. J. 49 (5) 662-667 [2017-09-00; online 2017-02-28]

Cartilage oligomeric matrix protein forms protein complexes with synovial lubricin via non-covalent and covalent interactions.

Flowers SA, Kalamajski S, Ali L, ..., Karlsson NG, Jin C

Osteoarthr. Cartil. 25 (9) 1496-1504 [2017-09-00; online 2017-04-01]

Aeromonas salmonicida Growth in Response to Atlantic Salmon Mucins Differs between Epithelial Sites, Is Governed by Sialylated and N-Acetylhexosamine-Containing O-Glycans, and Is Affected by Ca2.

Padra JT, Sundh H, Sundell K, ..., Karlsson NG, Lindén SK

Infect. Immun. 85 (8) - [2017-08-00; online 2017-07-19]

Dual action of bacteriocin PLNC8 αβ through inhibition of Porphyromonas gingivalis infection and promotion of cell proliferation.

Bengtsson T, Zhang B, Selegård R, ..., Aili D, Khalaf H

Pathog Dis 75 (5) - [2017-07-31; online 2017-06-13]

D-methionine interferes with non-typeable Haemophilus influenzae peptidoglycan synthesis during growth and biofilm formation.

Dawe H, Berger E, Sihlbom C, ..., Faust SN, Allan RN

Microbiology (Reading, Engl.) 163 (7) 1093-1104 [2017-07-00; online 2017-07-21]

Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.

Boulund F, Karlsson R, Gonzales-Siles L, ..., Moore ERB, Kristiansson E

Mol. Cell Proteomics 16 (6) 1052-1063 [2017-06-00; online 2017-04-18]

Influence of Glycosylation on Interfacial Properties of Recombinant Mucins: Adsorption, Surface Forces, and Friction.

An J, Jin C, Dėdinaitė A, ..., Karlsson NG, Claesson PM

Langmuir 33 (18) 4386-4395 [2017-05-09; online 2017-04-26]

Structural Diversity of Human Gastric Mucin Glycans.

Jin C, Kenny DT, Skoog EC, ..., Lindén SK, Karlsson NG

Mol. Cell Proteomics 16 (5) 743-758 [2017-05-00; online 2017-05-04]

Glycoproteomics [Service] PLA and Single Cell Proteomics [Service]

High levels of the AR-V7 Splice Variant and Co-Amplification of the Golgi Protein Coding YIPF6 in AR Amplified Prostate Cancer Bone Metastases.

Djusberg E, Jernberg E, Thysell E, ..., Brattsand M, Wikström P

Prostate 77 (6) 625-638 [2017-05-00; online 2017-02-01]

Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis.

Kalantari A, Chen T, Ji B, ..., Goelzer A, Mijakovic I

Front Microbiol 8 (-) 638 [2017-04-18; online 2017-04-18]

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

Liu Y, McBride R, Stoll M, ..., Feizi T, Smith DF

Glycobiology 27 (4) 280-284 [2017-04-00; online 2016-11-22]

Strain improvement of Pichia kudriavzevii TY13 for raised phytase production and reduced phosphate repression.

Qvirist L, Vorontsov E, Veide Vilg J, Andlid T

Microb Biotechnol 10 (2) 341-353 [2017-03-00; online 2016-10-28]

Overexpression of protein kinase STK25 in mice exacerbates ectopic lipid accumulation, mitochondrial dysfunction and insulin resistance in skeletal muscle.

Chursa U, Nuñez-Durán E, Cansby E, ..., Sihlbom C, Mahlapuu M

Diabetologia 60 (3) 553-567 [2017-03-00; online 2016-12-16]

Anaesthetic-induced cardioprotection in an experimental model of the Takotsubo syndrome - isoflurane vs. propofol.

Oras J, Redfors B, Ali A, ..., Omerovic E, Ricksten SE

Acta Anaesthesiol Scand 61 (3) 309-321 [2017-03-00; online 2017-01-22]

Characterization of Glycan Structures of Chondroitin Sulfate-Glycopeptides Facilitated by Sodium Ion-Pairing and Positive Mode LC-MS/MS.

Nilsson J, Noborn F, Gomez Toledo A, ..., Sihlbom C, Larson G

J. Am. Soc. Mass Spectrom. 28 (2) 229-241 [2017-02-00; online 2016-11-21]

Proteomic analysis of enterotoxigenic Escherichia coli (ETEC) in neutral and alkaline conditions.

Gonzales-Siles L, Karlsson R, Kenny D, Karlsson A, Sjöling Å

BMC Microbiol. 17 (1) 11 [2017-01-07; online 2017-01-07]

Proteomic analyses of limbic regions in neonatal male, female and androgen receptor knockout mice.

Zettergren A, Karlsson S, Studer E, ..., Sihlbom C, Westberg L

BMC Neurosci 18 (1) 9 [2017-01-05; online 2017-01-05]

Year 2016

High-Throughput Analysis of the Plasma N-Glycome by UHPLC.

Adamczyk B, Stöckmann H, O'Flaherty R, Karlsson NG, Rudd PM

Methods Mol. Biol. 1503 (-) 97-108 [2016-10-16; online 2016-10-16]

Databases and Associated Tools for Glycomics and Glycoproteomics.

Lisacek F, Mariethoz J, Alocci D, ..., Jin C, Karlsson NG

Methods Mol. Biol. 1503 (-) 235-264 [2016-10-16; online 2016-10-16]