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Cell. Sci.", "issn": "1477-9137", "volume": "137", "issue": "20", "issn-l": "0021-9533"}, "abstract": "Bioimage analysis (BIA), a crucial discipline in biological research, overcomes the limitations of subjective analysis in microscopy through the creation and application of quantitative and reproducible methods. The establishment of dedicated BIA support within academic institutions is vital to improving research quality and efficiency and can significantly advance scientific discovery. However, a lack of training resources, limited career paths and insufficient recognition of the contributions made by bioimage analysts prevent the full realization of this potential. This Perspective - the result of the recent The Company of Biologists Workshop 'Effectively Communicating Bioimage Analysis', which aimed to summarize the global BIA landscape, categorize obstacles and offer possible solutions - proposes strategies to bring about a cultural shift towards recognizing the value of BIA by standardizing tools, improving training and encouraging formal credit for contributions. We also advocate for increased funding, standardized practices and enhanced collaboration, and we conclude with a call to action for all stakeholders to join efforts in advancing BIA.", "doi": "10.1242/jcs.262322", "pmid": "39475207", "labels": {"BioImage Informatics": "Collaborative", "Integrated Microscopy Technologies Gothenburg": "Service", "Bioinformatics (NBIS)": "Collaborative"}, "xrefs": [{"db": "pii", "key": "362545"}], "notes": [], "created": "2024-11-13T10:08:24.614Z", "modified": "2024-11-15T12:02:35.328Z"}, {"entity": "publication", "iuid": "7294a8cd879d4bff8d66b35a02dd1512", "links": {"self": {"href": "https://publications.scilifelab.se/publication/7294a8cd879d4bff8d66b35a02dd1512.json"}, "display": {"href": "https://publications.scilifelab.se/publication/7294a8cd879d4bff8d66b35a02dd1512"}}, "title": "Community-developed checklists for publishing images and image analyses.", "authors": [{"family": "Schmied", "given": "Christopher", "initials": "C", "orcid": "0000-0003-2058-1124", "researcher": {"href": "https://publications.scilifelab.se/researcher/ad6aa8681f944fccbc57141cfcebfcc6.json"}}, {"family": "Nelson", "given": "Michael S", "initials": "MS", "orcid": "0000-0003-0480-5597", "researcher": {"href": "https://publications.scilifelab.se/researcher/3897b6add2a340e19ad1e051f08931c5.json"}}, {"family": "Avilov", "given": "Sergiy", "initials": "S", "orcid": "0000-0003-0860-8857", "researcher": {"href": "https://publications.scilifelab.se/researcher/25497ef7230445d9a65ff80f2bd3caa9.json"}}, {"family": "Bakker", "given": "Gert-Jan", "initials": "GJ", "orcid": "0000-0003-3602-0014", "researcher": {"href": "https://publications.scilifelab.se/researcher/00acada708a34d5c8414acc61acad548.json"}}, {"family": "Bertocchi", "given": "Cristina", "initials": "C", "orcid": "0000-0003-0907-1318", "researcher": {"href": "https://publications.scilifelab.se/researcher/c0570143267045ed89697ade5036cca9.json"}}, {"family": "Bischof", "given": "Johanna", 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{"href": "https://publications.scilifelab.se/researcher/b5f7cae0ad8e49b2a932ab22bf911fb6.json"}}, {"family": "Strambio-De-Castillia", "given": "Caterina", "initials": "C", "orcid": "0000-0002-1069-1816", "researcher": {"href": "https://publications.scilifelab.se/researcher/d56f91373ceb40bab6bae2635961bdf5.json"}}, {"family": "Taatjes", "given": "Douglas", "initials": "D", "orcid": "0000-0003-1903-983X", "researcher": {"href": "https://publications.scilifelab.se/researcher/c6ea5eaf638d44878c83087e2dded63a.json"}}, {"family": "Tischer", "given": "Christian", "initials": "C", "orcid": "0000-0003-4105-1990", "researcher": {"href": "https://publications.scilifelab.se/researcher/3dc57b68dd4e40d28414fec28783bcc4.json"}}, {"family": "Jambor", "given": "Helena Klara", "initials": "HK", "orcid": "0000-0003-3397-1842", "researcher": {"href": "https://publications.scilifelab.se/researcher/4d9c995274164d5298f59dbd5c088ab7.json"}}], "type": "journal article", "published": "2024-02-00", "journal": {"title": "Nat. Methods", "issn": "1548-7105", "volume": "21", "issue": "2", "pages": "170-181", "issn-l": "1548-7091"}, "abstract": "Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However, for scientists wishing to publish obtained images and image-analysis results, there are currently no unified guidelines for best practices. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here, we present community-developed checklists for preparing light microscopy images and describing image analyses for publications. These checklists offer authors, readers and publishers key recommendations for image formatting and annotation, color selection, data availability and reporting image-analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby to heighten the quality and explanatory power of microscopy data.", "doi": "10.1038/s41592-023-01987-9", "pmid": "37710020", "labels": {"Integrated Microscopy Technologies Gothenburg": "Service"}, "xrefs": [{"db": "mid", "key": "NIHMS1934198"}, {"db": "pmc", "key": "PMC10922596"}, {"db": "pii", "key": "10.1038/s41592-023-01987-9"}], "notes": [], "created": "2023-12-01T10:54:11.960Z", "modified": "2024-11-15T12:11:05.874Z"}]}