{"entity": "researcher", "timestamp": "2026-08-19T21:17:52.450Z", "family": "Guarracino", "given": "Andrea", "initials": "A", "orcid": "0000-0001-9744-131X", "affiliations": ["Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.", "Human Technopole, Milan, Italy."], "links": {"self": {"href": "https://publications.scilifelab.se/researcher/d8abf345bee84996a9e60ee8ffd6d548.json"}, "display": {"href": "https://publications.scilifelab.se/researcher/d8abf345bee84996a9e60ee8ffd6d548"}}, "publications": [{"entity": "publication", "iuid": "d8ea4ae884564d91b2dc6737a142405f", "links": {"self": {"href": "https://publications.scilifelab.se/publication/d8ea4ae884564d91b2dc6737a142405f.json"}, "display": {"href": "https://publications.scilifelab.se/publication/d8ea4ae884564d91b2dc6737a142405f"}}, "title": "Building pangenome graphs.", "authors": [{"family": "Garrison", "given": "Erik", "initials": "E", "orcid": "0000-0003-3821-631X", "researcher": {"href": "https://publications.scilifelab.se/researcher/24e84a6abf72491f83c77c3aebe4dce7.json"}}, {"family": "Guarracino", "given": "Andrea", "initials": "A", "orcid": "0000-0001-9744-131X", "researcher": {"href": "https://publications.scilifelab.se/researcher/d8abf345bee84996a9e60ee8ffd6d548.json"}}, {"family": "Heumos", "given": "Simon", "initials": "S", "orcid": "0000-0003-3326-817X", "researcher": {"href": "https://publications.scilifelab.se/researcher/4f11a2de74cf459b8be49d3323b77a80.json"}}, {"family": "Villani", "given": "Flavia", "initials": "F", "orcid": "0000-0003-3633-0610", "researcher": {"href": "https://publications.scilifelab.se/researcher/f448014ff78b44fdb185435371364b92.json"}}, {"family": "Bao", "given": "Zhigui", "initials": "Z", "orcid": "0000-0003-3601-460X", "researcher": {"href": "https://publications.scilifelab.se/researcher/1a0295f17f6a4e559815143aacf2507b.json"}}, {"family": "Tattini", "given": "Lorenzo", "initials": "L"}, {"family": "Hagmann", 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"0000-0002-8238-1083", "researcher": {"href": "https://publications.scilifelab.se/researcher/5fa806f0d1db46ac961358ba0c96eec6.json"}}, {"family": "Wu", "given": "Yi", "initials": "Y"}, {"family": "Chen", "given": "Hao", "initials": "H"}, {"family": "de Ligt", "given": "Joep", "initials": "J", "orcid": "0000-0002-0348-419X", "researcher": {"href": "https://publications.scilifelab.se/researcher/40d475cc884547138a9c295890f7778e.json"}}, {"family": "Sudmant", "given": "Peter H", "initials": "PH", "orcid": "0000-0002-9573-8248", "researcher": {"href": "https://publications.scilifelab.se/researcher/0e517350bf834957bdd7bff17d445092.json"}}, {"family": "Huang", "given": "Sanwen", "initials": "S", "orcid": "0000-0002-8547-5309", "researcher": {"href": "https://publications.scilifelab.se/researcher/e00097fbdba1494cb86a5ff0c6fcdbcb.json"}}, {"family": "Weigel", "given": "Detlef", "initials": "D", "orcid": "0000-0002-2114-7963", "researcher": {"href": "https://publications.scilifelab.se/researcher/2842f6fa8ed546faa2e7bfdbb7992411.json"}}, {"family": "Soranzo", "given": "Nicole", "initials": "N"}, {"family": "Colonna", "given": "Vincenza", "initials": "V", "orcid": "0000-0002-3966-0474", "researcher": {"href": "https://publications.scilifelab.se/researcher/d1c7f65ac609462aa17743e11d9b08fd.json"}}, {"family": "Williams", "given": "Robert W", "initials": "RW"}, {"family": "Prins", "given": "Pjotr", "initials": "P", "orcid": "0000-0002-8021-9162", "researcher": {"href": "https://publications.scilifelab.se/researcher/5568797646cc40dd856b7cd5fe3815fa.json"}}], "type": "journal article", "published": "2024-10-21", "journal": {"title": "Nat. Methods", "issn": "1548-7105", "issn-l": "1548-7091"}, "abstract": "Pangenome graphs can represent all variation between multiple reference genomes, but current approaches to build them exclude complex sequences or are based upon a single reference. In response, we developed the PanGenome Graph Builder, a pipeline for constructing pangenome graphs without bias or exclusion. The PanGenome Graph Builder uses all-to-all alignments to build a variation graph in which we can identify variation, measure conservation, detect recombination events and infer phylogenetic relationships.", "doi": "10.1038/s41592-024-02430-3", "pmid": "39433878", "labels": {"Clinical Genomics Gothenburg": "Service", "Clinical Genomics": "Service"}, "xrefs": [{"db": "pii", "key": "10.1038/s41592-024-02430-3"}], "notes": [], "created": "2024-11-01T08:16:26.019Z", "modified": "2024-11-01T08:22:22.025Z"}]}