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"orcid": "0000-0002-9868-6914", "researcher": {"href": "https://publications.scilifelab.se/researcher/c96e876d9fde4543b3f1401cdeb78f91.json"}}, {"family": "Payne-Dwyer", "given": "Alexander L", "initials": "AL", "orcid": "0000-0001-8802-352X", "researcher": {"href": "https://publications.scilifelab.se/researcher/719a8aba6ac2413bb571dbc252c3556d.json"}}, {"family": "Peterson", "given": "John", "initials": "J", "orcid": "0000-0002-5528-8561", "researcher": {"href": "https://publications.scilifelab.se/researcher/797076dcf1304650b49aa20522cab843.json"}}, {"family": "Podder", "given": "Santosh", "initials": "S", "orcid": "0000-0003-0576-4598", "researcher": {"href": "https://publications.scilifelab.se/researcher/e1dcfd06eb5841d380d14e4a9f8e4fbf.json"}}, {"family": "Ravasio", "given": "Andrea", "initials": "A", "orcid": "0000-0001-7835-5133", "researcher": {"href": "https://publications.scilifelab.se/researcher/230b8bbce5a34d3f97d463e6c7201404.json"}}, {"family": "Rosa-Molinar", "given": "Eduardo", "initials": "E", "orcid": "0000-0003-2057-8937", "researcher": {"href": "https://publications.scilifelab.se/researcher/0636fdc2955b467ba54cdfb828aa897f.json"}}, {"family": "Schroth-Diez", "given": "Britta", "initials": "B", "orcid": "0000-0002-4908-5952", "researcher": {"href": "https://publications.scilifelab.se/researcher/64d71204d62442b88b5e1a4b3cc5f19d.json"}}, {"family": "Selchow", "given": "Olaf", "initials": "O", "orcid": "0009-0005-4110-9373", "researcher": {"href": "https://publications.scilifelab.se/researcher/6ca99855c87a4298b366c6faff96ddc9.json"}}, {"family": "Srinivasan", "given": "Sathya", "initials": "S", "orcid": "0000-0002-5386-8722", "researcher": {"href": "https://publications.scilifelab.se/researcher/b5f7cae0ad8e49b2a932ab22bf911fb6.json"}}, {"family": "Taatjes", "given": "Douglas", "initials": "D", "orcid": "0000-0003-1903-983X", "researcher": {"href": "https://publications.scilifelab.se/researcher/c6ea5eaf638d44878c83087e2dded63a.json"}}, {"family": "Vonderstein", "given": "Kirstin", "initials": "K", "orcid": "0000-0002-1437-413X", "researcher": {"href": "https://publications.scilifelab.se/researcher/f021e58f6e754ef2b5f861ba724549cf.json"}}, {"family": "Walther", "given": "Christa", "initials": "C", "orcid": "0000-0002-8962-3102", "researcher": {"href": "https://publications.scilifelab.se/researcher/7af103f5623f4437bbc47135ff45b381.json"}}, {"family": "Nitschke", "given": "Roland", "initials": "R", "orcid": "0000-0002-9397-8475", "researcher": {"href": "https://publications.scilifelab.se/researcher/898e19916e4a4837a86226d735ff1ed8.json"}}], "type": "journal article", "published": "2026-03-02", "journal": {"title": "J. Cell Biol.", "issn": "1540-8140", "volume": "225", "issue": "3", "issn-l": "0021-9525"}, "abstract": "Incomplete reporting of microscopy methods undermines transparency, reproducibility, and data reuse. Despite recent initiatives, comprehensive, broadly endorsed, and accessible reporting guidelines are still lacking. Here, we present a bare minimal microscopy reporting requirements checklist that integrates human- and machine-readable input to provide clear, actionable guidance for researchers, reviewers, and publishers and to advance community standards in microscopy.", "doi": "10.1083/jcb.202601032", "pmid": "41739099", "labels": {"Integrated Microscopy Technologies Gothenburg": "Technology development"}, "xrefs": [{"db": "pii", "key": "281525"}], "notes": [], "created": "2026-08-11T10:57:29.584Z", "modified": "2026-08-11T10:57:31.552Z"}, {"entity": "publication", "iuid": "bb241ed48fe94700bafa1c93cc2bba33", "links": {"self": {"href": "https://publications.scilifelab.se/publication/bb241ed48fe94700bafa1c93cc2bba33.json"}, "display": {"href": "https://publications.scilifelab.se/publication/bb241ed48fe94700bafa1c93cc2bba33"}}, "title": "The crucial role of bioimage analysts in scientific research and publication.", "authors": [{"family": "Cimini", "given": "Beth A", "initials": "BA", "orcid": "0000-0001-9640-9318", "researcher": {"href": "https://publications.scilifelab.se/researcher/db23220ace18412a872eeedc98b6ca3d.json"}}, {"family": "Bankhead", "given": "Peter", "initials": "P", "orcid": "0000-0003-4851-8813", "researcher": {"href": "https://publications.scilifelab.se/researcher/677800a098f9480aad3629a35a6d7145.json"}}, {"family": "D'Antuono", "given": "Rocco", "initials": "R", "orcid": "0000-0003-0180-6500", "researcher": {"href": "https://publications.scilifelab.se/researcher/19a219cdf18a48c581c66844eed7f888.json"}}, {"family": "Fazeli", "given": "Elnaz", "initials": "E", "orcid": "0000-0002-0770-0777", "researcher": {"href": "https://publications.scilifelab.se/researcher/18bdf85441724603af3433b9ca2671a7.json"}}, {"family": "Fernandez-Rodriguez", "given": "Julia", "initials": "J", "orcid": "0000-0003-4522-0966", "researcher": {"href": "https://publications.scilifelab.se/researcher/3bd9c743e99d479cb752aeec947acab3.json"}}, {"family": "Fuster-Barcel\u00f3", "given": 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"Virginie", "initials": "V", "orcid": "0000-0002-2859-9241", "researcher": {"href": "https://publications.scilifelab.se/researcher/c4215607e1ed4f18b2809de6c5e34df6.json"}}, {"family": "Umney", "given": "Oliver", "initials": "O", "orcid": "0009-0005-2321-9413", "researcher": {"href": "https://publications.scilifelab.se/researcher/2ed29415dcf34d69b863d06e8edaa256.json"}}, {"family": "Wiggins", "given": "Laura", "initials": "L", "orcid": "0000-0003-4615-2379", "researcher": {"href": "https://publications.scilifelab.se/researcher/dbdc5616fe8542638669cbd647c46bb9.json"}}, {"family": "Eliceiri", "given": "Kevin W", "initials": "KW", "orcid": "0000-0001-8678-670X", "researcher": {"href": "https://publications.scilifelab.se/researcher/acb896fcca6a49b096068c3b5294624d.json"}}], "type": "journal article", "published": "2024-10-15", "journal": {"title": "J. Cell. Sci.", "issn": "1477-9137", "volume": "137", "issue": "20", "issn-l": "0021-9533"}, "abstract": "Bioimage analysis (BIA), a crucial discipline in biological research, overcomes the limitations of subjective analysis in microscopy through the creation and application of quantitative and reproducible methods. The establishment of dedicated BIA support within academic institutions is vital to improving research quality and efficiency and can significantly advance scientific discovery. However, a lack of training resources, limited career paths and insufficient recognition of the contributions made by bioimage analysts prevent the full realization of this potential. This Perspective - the result of the recent The Company of Biologists Workshop 'Effectively Communicating Bioimage Analysis', which aimed to summarize the global BIA landscape, categorize obstacles and offer possible solutions - proposes strategies to bring about a cultural shift towards recognizing the value of BIA by standardizing tools, improving training and encouraging formal credit for contributions. We also advocate for increased funding, standardized practices and enhanced collaboration, and we conclude with a call to action for all stakeholders to join efforts in advancing BIA.", "doi": "10.1242/jcs.262322", "pmid": "39475207", "labels": {"BioImage Informatics": "Collaborative", "Integrated Microscopy Technologies Gothenburg": "Service", "Bioinformatics (NBIS)": "Collaborative"}, "xrefs": [{"db": "pii", "key": "362545"}], "notes": [], "created": "2024-11-13T10:08:24.614Z", "modified": "2024-11-15T12:02:35.328Z"}, {"entity": "publication", "iuid": "7294a8cd879d4bff8d66b35a02dd1512", "links": {"self": {"href": "https://publications.scilifelab.se/publication/7294a8cd879d4bff8d66b35a02dd1512.json"}, "display": {"href": "https://publications.scilifelab.se/publication/7294a8cd879d4bff8d66b35a02dd1512"}}, "title": "Community-developed checklists for publishing images and image analyses.", "authors": [{"family": "Schmied", "given": "Christopher", "initials": "C", "orcid": "0000-0003-2058-1124", "researcher": {"href": "https://publications.scilifelab.se/researcher/ad6aa8681f944fccbc57141cfcebfcc6.json"}}, {"family": "Nelson", "given": "Michael S", "initials": "MS", "orcid": "0000-0003-0480-5597", "researcher": {"href": "https://publications.scilifelab.se/researcher/3897b6add2a340e19ad1e051f08931c5.json"}}, {"family": "Avilov", "given": "Sergiy", "initials": "S", "orcid": "0000-0003-0860-8857", "researcher": {"href": "https://publications.scilifelab.se/researcher/25497ef7230445d9a65ff80f2bd3caa9.json"}}, {"family": "Bakker", "given": "Gert-Jan", "initials": "GJ", "orcid": "0000-0003-3602-0014", "researcher": {"href": "https://publications.scilifelab.se/researcher/00acada708a34d5c8414acc61acad548.json"}}, {"family": "Bertocchi", "given": "Cristina", "initials": "C", "orcid": "0000-0003-0907-1318", "researcher": {"href": "https://publications.scilifelab.se/researcher/c0570143267045ed89697ade5036cca9.json"}}, {"family": "Bischof", "given": "Johanna", "initials": "J", "orcid": "0000-0002-5668-841X", "researcher": {"href": "https://publications.scilifelab.se/researcher/99ccae56fae9424a99b47695cfb5aae2.json"}}, {"family": "Boehm", "given": "Ulrike", "initials": "U", "orcid": "0000-0001-7471-2244", "researcher": {"href": "https://publications.scilifelab.se/researcher/4c8a69a74a1d4760a424493c109ca0c1.json"}}, {"family": "Brocher", "given": "Jan", "initials": "J", "orcid": "0000-0001-8565-625X", "researcher": {"href": "https://publications.scilifelab.se/researcher/ea740b88acb542c69caacb8f4c6e4ef5.json"}}, {"family": "Carvalho", "given": "Mariana T", "initials": "MT", "orcid": "0000-0002-4281-5799", "researcher": {"href": "https://publications.scilifelab.se/researcher/e83178e155c34acbbd2174b68c0caeee.json"}}, {"family": "Chiritescu", "given": "Catalin", "initials": "C"}, {"family": "Christopher", "given": "Jana", "initials": "J", "orcid": "0000-0002-2699-3368", "researcher": {"href": 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"researcher": {"href": "https://publications.scilifelab.se/researcher/acb896fcca6a49b096068c3b5294624d.json"}}, {"family": "Fernandez-Rodriguez", "given": "Julia", "initials": "J", "orcid": "0000-0003-4522-0966", "researcher": {"href": "https://publications.scilifelab.se/researcher/3bd9c743e99d479cb752aeec947acab3.json"}}, {"family": "Gaudreault", "given": "Nathalie", "initials": "N", "orcid": "0000-0002-9220-5366", "researcher": {"href": "https://publications.scilifelab.se/researcher/c2a75875451c4bb0ab0d96da9d52fd0d.json"}}, {"family": "Gelman", "given": "Laurent", "initials": "L", "orcid": "0000-0003-3277-3115", "researcher": {"href": "https://publications.scilifelab.se/researcher/879c0baa809c45caa6d67dffde4ecabd.json"}}, {"family": "Grunwald", "given": "David", "initials": "D", "orcid": "0000-0001-9067-804X", "researcher": {"href": "https://publications.scilifelab.se/researcher/b46507eeed044d7b9fdf394b0d396edd.json"}}, {"family": "Gu", "given": "Tingting", "initials": "T", "orcid": 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"initials": "R"}, {"family": "North", "given": "Alison", "initials": "A"}, {"family": "Parslow", "given": "Adam C", "initials": "AC", "orcid": "0000-0002-9868-6914", "researcher": {"href": "https://publications.scilifelab.se/researcher/c96e876d9fde4543b3f1401cdeb78f91.json"}}, {"family": "Payne-Dwyer", "given": "Alex", "initials": "A", "orcid": "0000-0001-8802-352X", "researcher": {"href": "https://publications.scilifelab.se/researcher/719a8aba6ac2413bb571dbc252c3556d.json"}}, {"family": "Plantard", "given": "Laure", "initials": "L", "orcid": "0000-0002-8386-3535", "researcher": {"href": "https://publications.scilifelab.se/researcher/08f3d7e2b4fe461c878cadd35ddc0018.json"}}, {"family": "Ali", "given": "Rizwan", "initials": "R"}, {"family": "Schroth-Diez", "given": "Britta", "initials": "B"}, {"family": "Sch\u00fctz", "given": "Lucas", "initials": "L"}, {"family": "Scott", "given": "Ryan T", "initials": "RT", "orcid": "0000-0003-0654-5661", "researcher": {"href": "https://publications.scilifelab.se/researcher/66cf459366ef400a986a5ac8bc5a3558.json"}}, {"family": "Seitz", "given": "Arne", "initials": "A", "orcid": "0000-0002-5013-1557", "researcher": {"href": "https://publications.scilifelab.se/researcher/a22f2f49c174438a9c42e69ac6a451e8.json"}}, {"family": "Selchow", "given": "Olaf", "initials": "O", "orcid": "0009-0005-4110-9373", "researcher": {"href": "https://publications.scilifelab.se/researcher/6ca99855c87a4298b366c6faff96ddc9.json"}}, {"family": "Sharma", "given": "Ved P", "initials": "VP", "orcid": "0000-0001-9998-5070", "researcher": {"href": "https://publications.scilifelab.se/researcher/73bca36d466b426eb62b83ca3289c7f0.json"}}, {"family": "Spitaler", "given": "Martin", "initials": "M", "orcid": "0000-0002-8833-638X", "researcher": {"href": "https://publications.scilifelab.se/researcher/2bc5b8c26b044442b7c971043a57eded.json"}}, {"family": "Srinivasan", "given": "Sathya", "initials": "S", "orcid": "0000-0002-5386-8722", "researcher": {"href": "https://publications.scilifelab.se/researcher/b5f7cae0ad8e49b2a932ab22bf911fb6.json"}}, {"family": "Strambio-De-Castillia", "given": "Caterina", "initials": "C", "orcid": "0000-0002-1069-1816", "researcher": {"href": "https://publications.scilifelab.se/researcher/d56f91373ceb40bab6bae2635961bdf5.json"}}, {"family": "Taatjes", "given": "Douglas", "initials": "D", "orcid": "0000-0003-1903-983X", "researcher": {"href": "https://publications.scilifelab.se/researcher/c6ea5eaf638d44878c83087e2dded63a.json"}}, {"family": "Tischer", "given": "Christian", "initials": "C", "orcid": "0000-0003-4105-1990", "researcher": {"href": "https://publications.scilifelab.se/researcher/3dc57b68dd4e40d28414fec28783bcc4.json"}}, {"family": "Jambor", "given": "Helena Klara", "initials": "HK", "orcid": "0000-0003-3397-1842", "researcher": {"href": "https://publications.scilifelab.se/researcher/4d9c995274164d5298f59dbd5c088ab7.json"}}], "type": "journal article", "published": "2024-02-00", "journal": {"title": "Nat. Methods", "issn": "1548-7105", "volume": "21", "issue": "2", "pages": "170-181", "issn-l": "1548-7091"}, "abstract": "Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However, for scientists wishing to publish obtained images and image-analysis results, there are currently no unified guidelines for best practices. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here, we present community-developed checklists for preparing light microscopy images and describing image analyses for publications. These checklists offer authors, readers and publishers key recommendations for image formatting and annotation, color selection, data availability and reporting image-analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby to heighten the quality and explanatory power of microscopy data.", "doi": "10.1038/s41592-023-01987-9", "pmid": "37710020", "labels": {"Integrated Microscopy Technologies Gothenburg": "Service"}, "xrefs": [{"db": "mid", "key": "NIHMS1934198"}, {"db": "pmc", "key": "PMC10922596"}, {"db": "pii", "key": "10.1038/s41592-023-01987-9"}], "notes": [], "created": "2023-12-01T10:54:11.960Z", "modified": "2024-11-15T12:11:05.874Z"}, {"entity": "publication", "iuid": "de4d7e55211c439e95a4878e3ab8842e", "links": {"self": {"href": "https://publications.scilifelab.se/publication/de4d7e55211c439e95a4878e3ab8842e.json"}, "display": {"href": "https://publications.scilifelab.se/publication/de4d7e55211c439e95a4878e3ab8842e"}}, "title": "Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists.", "authors": [{"family": "Martins", "given": "Gabriel G", "initials": "GG", "orcid": "0000-0002-6506-9776", "researcher": {"href": "https://publications.scilifelab.se/researcher/c04a08e246854401b529158afe9de318.json"}}, {"family": "Cordeli\u00e8res", "given": "Fabrice P", "initials": "FP", "orcid": "0000-0002-5383-5816", "researcher": {"href": "https://publications.scilifelab.se/researcher/cd3da472e85b4b19897bc513e443219f.json"}}, {"family": "Colombelli", "given": "Julien", "initials": "J", "orcid": "0000-0002-2784-4276", "researcher": {"href": "https://publications.scilifelab.se/researcher/e64e92116688467197a2eaadb170eb12.json"}}, {"family": "D'Antuono", "given": "Rocco", "initials": "R", "orcid": "0000-0003-0180-6500", "researcher": {"href": "https://publications.scilifelab.se/researcher/19a219cdf18a48c581c66844eed7f888.json"}}, {"family": "Golani", "given": "Ofra", "initials": "O", "orcid": "0000-0002-9793-236X", "researcher": {"href": "https://publications.scilifelab.se/researcher/e239b26ad266407eb249be51f728f2ef.json"}}, {"family": "Guiet", "given": "Romain", "initials": "R", "orcid": "0000-0001-6715-4897", "researcher": {"href": "https://publications.scilifelab.se/researcher/4e318b0b510843c194d0f1c6b852bceb.json"}}, {"family": "Haase", "given": "Robert", "initials": "R", "orcid": "0000-0001-5949-2327", "researcher": {"href": "https://publications.scilifelab.se/researcher/f99dc020f05f479cafa0aede600157f0.json"}}, {"family": "Klemm", "given": "Anna H", "initials": "AH", "orcid": "0000-0002-3466-1320", "researcher": {"href": "https://publications.scilifelab.se/researcher/4ae78afb2a424b0ab70d49871f361d13.json"}}, {"family": "Louveaux", "given": "Marion", "initials": "M", "orcid": "0000-0002-1794-3748", "researcher": {"href": "https://publications.scilifelab.se/researcher/3901ec2c7f1345f6974d7eae9766a502.json"}}, {"family": "Paul-Gilloteaux", "given": "Perrine", "initials": "P", "orcid": "0000-0002-4822-165X", "researcher": {"href": "https://publications.scilifelab.se/researcher/cc1aedddd2484c60b1e6bcf3aff9262a.json"}}, {"family": "Tinevez", "given": "Jean-Yves", "initials": "JY", "orcid": "0000-0002-0998-4718", "researcher": {"href": "https://publications.scilifelab.se/researcher/ed604822457048af8051bcb4e11da3a6.json"}}, {"family": "Miura", "given": "Kota", "initials": "K", "orcid": "0000-0001-6926-191X", "researcher": {"href": "https://publications.scilifelab.se/researcher/d2924dc08df743e188b5ead9a88449a6.json"}}], "type": "journal article", "published": "2021-04-30", "journal": {"title": "F1000Res", "issn": "2046-1402", "volume": "10", "pages": "334", "issn-l": "2046-1402"}, "abstract": "NEUBIAS, the European Network of Bioimage Analysts, was created in 2016 with the goal of improving the communication and the knowledge transfer among the various stakeholders involved in the acquisition, processing and analysis of biological image data, and to promote the establishment and recognition of the profession of Bioimage Analyst. One of the most successful initiatives of the NEUBIAS programme was its series of 15 training schools, which trained over 400 new Bioimage Analysts, coming from over 40 countries. Here we outline the rationale behind the innovative three-level program of the schools, the curriculum, the trainer recruitment and turnover strategy, the outcomes for the community and the career path of analysts, including some success stories. We discuss the future of the materials created during this programme and some of the new initiatives emanating from the community of NEUBIAS-trained analysts, such as the NEUBIAS Academy. Overall, we elaborate on how this training programme played a key role in collectively leveraging Bioimaging and Life Science research by bringing the latest innovations into structured, frequent and intensive training activities, and on why we believe this should become a model to further develop in Life Sciences.", "doi": "10.12688/f1000research.25485.1", "pmid": "34164115", "labels": {"BioImage Informatics": "Collaborative", "Bioinformatics (NBIS)": "Collaborative"}, "xrefs": [{"db": "pmc", "key": "PMC8215561"}], "notes": [], "created": "2021-11-29T12:35:36.781Z", "modified": "2021-11-29T12:35:37.127Z"}]}