{"entity": "researcher", "timestamp": "2026-07-20T12:45:46.448Z", "family": "Redondo", "given": "Miguel \u00c1", "initials": "M\u00c1", "orcid": "0000-0002-6383-5457", "affiliations": ["Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, 750 07 Uppsala, Sweden."], "links": {"self": {"href": "https://publications.scilifelab.se/researcher/24e77c460a3e4bc18efed51d74c53742.json"}, "display": {"href": "https://publications.scilifelab.se/researcher/24e77c460a3e4bc18efed51d74c53742"}}, "publications": [{"entity": "publication", "iuid": "bf374e60d7ef4ee294815bc54d6139f5", "links": {"self": {"href": "https://publications.scilifelab.se/publication/bf374e60d7ef4ee294815bc54d6139f5.json"}, "display": {"href": "https://publications.scilifelab.se/publication/bf374e60d7ef4ee294815bc54d6139f5"}}, "title": "Host genotype interacts with aerial spore communities and influences the needle mycobiome of Norway spruce.", "authors": [{"family": "Redondo", "given": "Miguel A", "initials": "MA", "orcid": "0000-0002-6383-5457", "researcher": {"href": "https://publications.scilifelab.se/researcher/24e77c460a3e4bc18efed51d74c53742.json"}}, {"family": "Oliva", "given": "Jon\u00e0s", "initials": "J", "orcid": "0000-0003-2418-2542", "researcher": {"href": "https://publications.scilifelab.se/researcher/ea605d40772449298a04cbf0b4b01de5.json"}}, {"family": "Elfstrand", "given": "Malin", "initials": "M", "orcid": "0000-0002-0214-5284", "researcher": {"href": "https://publications.scilifelab.se/researcher/2957dac173f4495a9245f0d8a9750606.json"}}, {"family": "Boberg", "given": "Johanna", "initials": "J", "orcid": "0000-0002-1300-8883", "researcher": {"href": "https://publications.scilifelab.se/researcher/e913853413c740d88f6d1b3b630dfccd.json"}}, {"family": "Capador-Barreto", "given": "Hern\u00e1n D", "initials": "HD", "orcid": "0000-0002-4811-7756", "researcher": {"href": "https://publications.scilifelab.se/researcher/fb91eb482eb149c7996bc11c9180d964.json"}}, {"family": "Karlsson", "given": "Bo", "initials": "B"}, {"family": "Berlin", "given": "Anna", "initials": "A", "orcid": "0000-0002-9518-5719", "researcher": {"href": "https://publications.scilifelab.se/researcher/023743c670cc408bb4ed767cb8ee558a.json"}}], "type": "journal article", "published": "2022-08-00", "journal": {"title": "Environ. Microbiol.", "issn": "1462-2920", "volume": "24", "issue": "8", "pages": "3640-3654", "issn-l": "1462-2912"}, "abstract": "The factors shaping the composition of the tree mycobiome are still under investigation. We tested the effects of host genotype, site, host phenotypic traits, and air fungal spore communities on the assembly of the fungi inhabiting Norway spruce needles. We used Norway spruce clones and spore traps within the collection sites and characterized both needle and air mycobiome communities by high-throughput sequencing of the ITS2 region. The composition of the needle mycobiome differed between Norway spruce clones, and clones with high genetic similarity had a more similar mycobiome. The needle mycobiome also varied across sites and was associated with the composition of the local air mycobiome and climate. Phenotypic traits such as diameter at breast height or crown health influenced the needle mycobiome to a lesser extent than host genotype and air mycobiome. Altogether, our results suggest that the needle mycobiome is mainly driven by the host genotype in combination with the composition of the local air spore communities. Our work highlights the role of host intraspecific variation in shaping the mycobiome of trees and provides new insights on the ecological processes structuring fungal communities inhabiting woody plants.", "doi": "10.1111/1462-2920.15974", "pmid": "35315253", "labels": {"NGI Long read": "Service", "NGI Uppsala (Uppsala Genome Center)": "Service", "National Genomics Infrastructure": "Service", "Bioinformatics Support for Computational Resources": "Service"}, "xrefs": [{"db": "pmc", "key": "PMC9544151"}, {"db": "figshare", "key": "10.6084/m9.figshare.13663586.v3"}, {"db": "figshare", "key": "10.6084/m9.figshare.17113361.v3"}], "notes": [], "created": "2022-03-29T04:48:28.972Z", "modified": "2024-01-16T13:48:35.541Z"}, {"entity": "publication", "iuid": "9f8db89ce0af486aa9d4f5494749df70", "links": {"self": {"href": "https://publications.scilifelab.se/publication/9f8db89ce0af486aa9d4f5494749df70.json"}, "display": {"href": "https://publications.scilifelab.se/publication/9f8db89ce0af486aa9d4f5494749df70"}}, "title": "Halophytophthora fluviatilis Pathogenicity and Distribution along a Mediterranean-Subalpine Gradient.", "authors": [{"family": "Caballol", "given": "Maria", "initials": "M", "orcid": "0000-0002-6968-7328", "researcher": {"href": "https://publications.scilifelab.se/researcher/3cb8ce81a7c745629a09f279f8bb0dc1.json"}}, {"family": "\u0160traus", "given": "Dora", "initials": "D", "orcid": "0000-0002-0805-4121", "researcher": {"href": "https://publications.scilifelab.se/researcher/898b05b91f9d42f689450cadfefe95b8.json"}}, {"family": "Macia", "given": "H\u00e9ctor", "initials": "H"}, {"family": "Ramis", "given": "Xavier", "initials": "X"}, {"family": "Redondo", "given": "Miguel \u00c1", "initials": "M\u00c1", "orcid": "0000-0002-6383-5457", "researcher": {"href": "https://publications.scilifelab.se/researcher/24e77c460a3e4bc18efed51d74c53742.json"}}, {"family": "Oliva", "given": "Jon\u00e0s", "initials": "J"}], "type": "journal article", "published": "2021-02-03", "journal": {"title": "JoF", "issn": "2309-608X", "volume": "7", "issue": "2", "pages": "112", "issn-l": null}, "abstract": "Halophytophthora species have been traditionally regarded as brackish water oomycetes; however, recent reports in inland freshwater call for a better understanding of their ecology and possible pathogenicity. We studied the distribution of Halophytophthora fluviatilis in 117 forest streams by metabarcoding river filtrates taken in spring and autumn and by direct isolation from floating leaves. Pathogenicity on six Fagaceae species and Alnus glutinosa was assessed by stem inoculations. The distribution of H. fluviatilis was correlated with high mean annual temperatures (>93.5% of reports in Ta > 12.2 \u00b0C) and low precipitation records. H. fluviatilis was therefore widely distributed in forest streams in a warm-dry climate, but it was mostly absent in subalpine streams. H. fluviatilis was primarily detected in autumn with few findings in spring (28.4% vs. 2.7% of streams). H. fluviatilis was able to cause small lesions on some tree species such as Quercus pubescens, Q. suber and A. glutinosa. Our findings suggest that H. fluviatilis may be adapted to warm and dry conditions, and that it does not pose a significant threat to the most common Mediterranean broadleaved trees.", "doi": "10.3390/jof7020112", "pmid": "33546355", "labels": {"NGI Uppsala (Uppsala Genome Center)": "Service", "National Genomics Infrastructure": "Service"}, "xrefs": [{"db": "pii", "key": "jof7020112"}, {"db": "pmc", "key": "PMC7913473"}], "notes": [], "created": "2021-02-17T19:29:11.111Z", "modified": "2021-11-10T12:27:06.226Z"}, {"entity": "publication", "iuid": "b069a230bccd448eb4a10bd0165f8c5d", "links": {"self": {"href": "https://publications.scilifelab.se/publication/b069a230bccd448eb4a10bd0165f8c5d.json"}, "display": {"href": "https://publications.scilifelab.se/publication/b069a230bccd448eb4a10bd0165f8c5d"}}, "title": "Vegetation type determines spore deposition within a forest-agricultural mosaic landscape.", "authors": [{"family": "Redondo", "given": "Miguel A", "initials": "MA", "orcid": "0000-0002-6383-5457", "researcher": {"href": "https://publications.scilifelab.se/researcher/24e77c460a3e4bc18efed51d74c53742.json"}}, {"family": "Berlin", "given": "Anna", "initials": "A", "orcid": "0000-0002-9518-5719", "researcher": {"href": "https://publications.scilifelab.se/researcher/023743c670cc408bb4ed767cb8ee558a.json"}}, {"family": "Boberg", "given": "Johanna", "initials": "J", "orcid": "0000-0002-1300-8883", "researcher": {"href": "https://publications.scilifelab.se/researcher/e913853413c740d88f6d1b3b630dfccd.json"}}, {"family": "Oliva", "given": "Jon\u00e0s", "initials": "J", "orcid": "0000-0003-2418-2542", "researcher": {"href": "https://publications.scilifelab.se/researcher/ea605d40772449298a04cbf0b4b01de5.json"}}], "type": "journal article", "published": "2020-06-01", "journal": {"title": "FEMS Microbiol. Ecol.", "issn": "1574-6941", "volume": "96", "issue": "6", "pages": null, "issn-l": "0168-6496"}, "abstract": "Predicting fungal community assembly is partly limited by our understanding of the factors driving the composition of deposited spores. We studied the relative contribution of vegetation, geographical distance, seasonality and weather to fungal spore deposition across three vegetation types. Active and passive spore traps were established in agricultural fields, deciduous forests and coniferous forests across a geographic gradient of \u223c600 km. Active traps captured the spore community suspended in air, reflecting the potential deposition, whereas passive traps reflected realized deposition. Fungal species were identified by metabarcoding of the ITS2 region. The composition of spore communities captured by passive traps differed more between vegetation types than across regions separated by >100 km, indicating that vegetation type was the strongest driver of composition of deposited spores. By contrast, vegetation contributed less to potential deposition, which followed a seasonal pattern. Within the same site, the spore communities captured by active traps differed from those captured by passive traps. Realized deposition tended to be dominated by spores of species related to vegetation. Temperature was negatively correlated with the fungal species richness of both potential and realized deposition. Our results indicate that vegetation may be able to maintain similar fungal communities across distances, and likely be the driving factor of fungal spore deposition at landscape level.", "doi": "10.1093/femsec/fiaa082", "pmid": "32356889", "labels": {"NGI Uppsala (Uppsala Genome Center)": null, "National Genomics Infrastructure": null}, "xrefs": [{"db": "pii", "key": "5827636"}, {"db": "pmc", "key": "PMC7239601"}, {"db": "figshare", "key": "10.6084/m9.figshare.10012058.v5"}], "notes": [], "created": "2020-09-15T06:20:53.690Z", "modified": "2021-11-10T12:50:28.016Z"}]}