{"entity": "journal", "iuid": "bd6bf4f97955479784c61b53c984435f", "timestamp": "2026-08-07T19:30:05.949Z", "links": {"self": {"href": "https://publications.scilifelab.se/journal/Wellcome%20Open%20Res.json"}, "display": {"href": "https://publications.scilifelab.se/journal/Wellcome%20Open%20Res"}}, "title": "Wellcome Open Res", "issn": "2398-502X", "issn-l": "2398-502X", "publications_count": 3, "publications": [{"entity": "publication", "iuid": "f64e4dcded1240568e175d59318ecd68", "links": {"self": {"href": "https://publications.scilifelab.se/publication/f64e4dcded1240568e175d59318ecd68.json"}, "display": {"href": "https://publications.scilifelab.se/publication/f64e4dcded1240568e175d59318ecd68"}}, "title": "The genome sequence of the Eurasian Curlew, Numenius arquata (Linnaeus, 1758).", "authors": [{"family": "Walsh", "given": "Grace", "initials": "G"}, {"family": "Donoghue", "given": "Barry O'", "initials": "BO"}, {"family": "H\u00f6glund", "given": "Jacob", "initials": "J"}, {"family": "McMahon", "given": "Barry John", "initials": "BJ", "orcid": "0000-0003-3143-8075", "researcher": {"href": "https://publications.scilifelab.se/researcher/2ba44012f4b040ae918c7cabfdbb49ec.json"}}, {"family": "Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team", "given": "", "initials": ""}, {"family": "WellcomeSanger Institute Scientific Operations: Sequencing Operations", "given": "", "initials": ""}, {"family": "Wellcome Sanger Institute Tree of Life Core Informatics team", "given": "", "initials": ""}, {"family": "Tree of Life Core Informatics collective", "given": "", "initials": ""}, {"family": "Darwin Tree of Life Consortium", "given": "", "initials": ""}], "type": "journal article", "published": "2025-06-02", "journal": {"title": "Wellcome Open Res", "issn": "2398-502X", "volume": "10", "pages": "298", "issn-l": "2398-502X"}, "abstract": "We present a genome assembly from a female specimen of Numenius arquata (Eurasian Curlew; Chordata; Aves; Charadriiformes; Scolopacidae). The assembly contains two haplotypes with total lengths of 1,348.86 megabases and 1,198.36 megabases. Most of haplotype 1 (89.99%) is scaffolded into 41 chromosomal pseudomolecules, including the W and Z sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.13 kilobases. Gene annotation of this assembly on Ensembl identified 15,412 protein-coding genes.", "doi": "10.12688/wellcomeopenres.24272.1", "pmid": "40880729", "labels": {"National Genomics Infrastructure": "Service", "NGI Stockholm (Genomics Production)": "Service", "NGI Short read": "Service", "NGI Other": "Service"}, "xrefs": [{"db": "pmc", "key": "PMC12381557"}], "notes": [], "created": "2025-11-21T09:17:11.591Z", "modified": "2025-11-21T09:17:11.682Z"}, {"entity": "publication", "iuid": "6dfa6120b7ef4380a12e3374d03f0f95", "links": {"self": {"href": "https://publications.scilifelab.se/publication/6dfa6120b7ef4380a12e3374d03f0f95.json"}, "display": {"href": "https://publications.scilifelab.se/publication/6dfa6120b7ef4380a12e3374d03f0f95"}}, "title": "The genome sequence of the white-tailed eagle, Haliaeetus albicilla (Linnaeus, 1758).", "authors": [{"family": "P\u00e1lsson", "given": "Sn\u00e6bj\u00f6rn", "initials": "S"}, {"family": "Skarph\u00e9\u00f0insson", "given": "Kristinn Haukur", "initials": "KH"}, {"family": "Heintz", "given": "Julia", "initials": "J", "orcid": "0009-0001-9345-1358", "researcher": {"href": "https://publications.scilifelab.se/researcher/f7ebbb1f975844f7910676091d05a61e.json"}}, {"family": "Quarfordt", "given": "Pernilla", "initials": "P"}, {"family": "Strand", "given": "Ann-Sofi", "initials": "AS"}, {"family": "Bunikis", "given": "Ignas", "initials": "I"}, {"family": "Pettersson", "given": "Olga Vinnere", "initials": "OV"}, {"family": "Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team", "given": "", "initials": ""}, {"family": "Wellcome Sanger Institute Scientific Operations: Sequencing Operations", "given": "", "initials": ""}, {"family": "Wellcome Sanger Institute Tree of Life Core Informatics team", "given": "", "initials": ""}, {"family": "Tree of Life Core Informatics collective", "given": "", "initials": ""}, {"family": "Darwin Tree of Life Consortium", "given": "", "initials": ""}], "type": "journal article", "published": "2024-10-09", "journal": {"title": "Wellcome Open Res", "issn": "2398-502X", "volume": "9", "pages": "575", "issn-l": "2398-502X"}, "abstract": "We present a genome assembly from an individual female Haliaeetus albicilla (the white-tailed eagle; Chordata; Aves; Accipitriformes; Accipitridae). The genome sequence has a total length of 1,320.30 megabases. Most of the assembly is scaffolded into 34 chromosomal pseudomolecules, including the Z and W sex chromosomes. Gene annotation of this assembly on Ensembl identified 17,501 protein-coding genes.", "doi": "10.12688/wellcomeopenres.23089.1", "pmid": "39534533", "labels": {"NGI Uppsala (Uppsala Genome Center)": "Collaborative", "NGI Long read": "Collaborative", "National Genomics Infrastructure": "Collaborative", "Bioinformatics Support for Computational Resources": "Service"}, "xrefs": [{"db": "pmc", "key": "PMC11555360"}], "notes": [], "created": "2024-11-04T20:48:53.042Z", "modified": "2024-11-25T10:31:35.253Z"}, {"entity": "publication", "iuid": "5662650d5f3b43ccada077c1fd1d6431", "links": {"self": {"href": "https://publications.scilifelab.se/publication/5662650d5f3b43ccada077c1fd1d6431.json"}, "display": {"href": "https://publications.scilifelab.se/publication/5662650d5f3b43ccada077c1fd1d6431"}}, "title": "Meta-analysis of exome array data identifies six novel genetic loci for lung function.", "authors": [{"family": "Jackson", "given": "Victoria E", "initials": "VE"}, {"family": "Latourelle", "given": "Jeanne C", "initials": "JC"}, {"family": "Wain", "given": "Louise V", "initials": "LV"}, {"family": "Smith", "given": "Albert V", "initials": "AV"}, {"family": "Grove", "given": "Megan L", "initials": "ML"}, {"family": "Bartz", "given": "Traci M", "initials": "TM"}, {"family": "Obeidat", "given": "Ma'en", "initials": "M"}, {"family": "Province", "given": "Michael A", "initials": "MA"}, {"family": "Gao", "given": "Wei", "initials": "W"}, {"family": "Qaiser", "given": "Beenish", "initials": "B"}, {"family": "Porteous", "given": "David J", "initials": "DJ"}, {"family": "Cassano", "given": "Patricia A", "initials": "PA"}, {"family": "Ahluwalia", "given": "Tarunveer S", "initials": "TS"}, {"family": "Grarup", "given": "Niels", "initials": "N"}, {"family": "Li", "given": "Jin", "initials": "J"}, {"family": "Altmaier", "given": "Elisabeth", "initials": "E"}, {"family": "Marten", "given": "Jonathan", "initials": "J"}, {"family": "Harris", "given": "Sarah E", "initials": "SE"}, {"family": "Manichaikul", "given": "Ani", "initials": "A"}, {"family": "Pottinger", "given": "Tess D", "initials": "TD"}, {"family": "Li-Gao", "given": "Ruifang", "initials": "R"}, {"family": "Lind-Thomsen", "given": "Allan", "initials": "A"}, {"family": "Mahajan", "given": "Anubha", "initials": "A"}, {"family": "Lahousse", "given": "Lies", "initials": "L"}, {"family": "Imboden", "given": "Medea", "initials": "M"}, {"family": "Teumer", "given": "Alexander", "initials": "A"}, {"family": "Prins", "given": "Bram", "initials": "B"}, {"family": "Lyytik\u00e4inen", "given": "Leo-Pekka", "initials": "LP"}, {"family": "Eiriksdottir", "given": "Gudny", "initials": "G"}, {"family": "Franceschini", "given": "Nora", "initials": "N"}, {"family": "Sitlani", "given": "Colleen M", "initials": "CM"}, {"family": "Brody", "given": "Jennifer A", "initials": "JA"}, {"family": "Boss\u00e9", "given": "Yohan", "initials": "Y"}, {"family": "Timens", "given": "Wim", "initials": "W"}, {"family": "Kraja", "given": "Aldi", "initials": "A"}, {"family": "Loukola", "given": "Anu", "initials": "A"}, {"family": "Tang", "given": "Wenbo", "initials": "W"}, {"family": "Liu", "given": "Yongmei", "initials": "Y"}, {"family": "Bork-Jensen", "given": "Jette", "initials": "J"}, {"family": "Justesen", "given": "Johanne M", "initials": "JM"}, {"family": "Linneberg", "given": "Allan", "initials": "A"}, {"family": "Lange", "given": "Leslie A", "initials": "LA"}, {"family": "Rawal", "given": "Rajesh", "initials": "R"}, {"family": "Karrasch", "given": "Stefan", "initials": "S"}, {"family": "Huffman", "given": "Jennifer E", "initials": "JE"}, {"family": "Smith", "given": "Blair H", "initials": "BH"}, {"family": "Davies", "given": "Gail", "initials": "G"}, {"family": "Burkart", "given": "Kristin M", "initials": "KM"}, {"family": "Mychaleckyj", "given": "Josyf C", "initials": "JC"}, {"family": "Bonten", "given": "Tobias N", "initials": "TN"}, {"family": "Enroth", "given": "Stefan", "initials": "S"}, {"family": "Lind", "given": "Lars", "initials": "L"}, {"family": "Brusselle", "given": "Guy G", "initials": "GG"}, {"family": "Kumar", "given": "Ashish", "initials": "A"}, {"family": "Stubbe", "given": "Beate", "initials": "B"}, {"family": "Understanding Society Scientific Group", "given": "", "initials": ""}, {"family": "K\u00e4h\u00f6nen", "given": "Mika", "initials": "M"}, {"family": "Wyss", "given": "Annah B", "initials": "AB"}, {"family": "Psaty", "given": "Bruce M", "initials": "BM"}, {"family": "Heckbert", "given": "Susan R", "initials": "SR"}, {"family": "Hao", "given": "Ke", "initials": "K"}, {"family": "Rantanen", "given": "Taina", "initials": "T"}, {"family": "Kritchevsky", "given": "Stephen B", "initials": "SB"}, {"family": "Lohman", "given": "Kurt", "initials": "K"}, {"family": "Skaaby", "given": "Tea", "initials": "T"}, {"family": "Pisinger", "given": "Charlotta", "initials": "C"}, {"family": "Hansen", "given": "Torben", "initials": "T"}, {"family": "Schulz", "given": "Holger", "initials": "H"}, {"family": "Polasek", "given": "Ozren", "initials": "O"}, {"family": "Campbell", "given": "Archie", "initials": "A"}, {"family": "Starr", "given": "John M", "initials": "JM"}, {"family": "Rich", "given": "Stephen S", "initials": "SS"}, {"family": "Mook-Kanamori", "given": "Dennis O", "initials": "DO"}, {"family": "Johansson", "given": "\u00c5sa", "initials": "\u00c5"}, {"family": "Ingelsson", "given": "Erik", "initials": "E"}, {"family": "Uitterlinden", "given": "Andr\u00e9 G", "initials": "AG"}, {"family": "Weiss", "given": "Stefan", "initials": "S"}, {"family": "Raitakari", "given": "Olli T", "initials": "OT"}, {"family": "Gudnason", "given": "Vilmundur", "initials": "V"}, {"family": "North", "given": "Kari E", "initials": "KE"}, {"family": "Gharib", "given": "Sina A", "initials": "SA"}, {"family": "Sin", "given": "Don D", "initials": "DD"}, {"family": "Taylor", "given": "Kent D", "initials": "KD"}, {"family": "O'Connor", "given": "George T", "initials": "GT"}, {"family": "Kaprio", "given": "Jaakko", "initials": "J"}, {"family": "Harris", "given": "Tamara B", "initials": "TB"}, {"family": "Pederson", "given": "Oluf", "initials": "O"}, {"family": "Vestergaard", "given": "Henrik", "initials": "H"}, {"family": "Wilson", "given": "James G", "initials": "JG"}, {"family": "Strauch", "given": "Konstantin", "initials": "K"}, {"family": "Hayward", "given": "Caroline", "initials": "C"}, {"family": "Kerr", "given": "Shona", "initials": "S"}, {"family": "Deary", "given": "Ian J", "initials": "IJ"}, {"family": "Barr", "given": "R Graham", "initials": "RG"}, {"family": "de Mutsert", "given": "Ren\u00e9e", "initials": "R"}, {"family": "Gyllensten", "given": "Ulf", "initials": "U"}, {"family": "Morris", "given": "Andrew P", "initials": "AP"}, {"family": "Ikram", "given": "M Arfan", "initials": "MA"}, {"family": "Probst-Hensch", "given": "Nicole", "initials": "N"}, {"family": "Gl\u00e4ser", "given": "Sven", "initials": "S"}, {"family": "Zeggini", "given": "Eleftheria", "initials": "E"}, {"family": "Lehtim\u00e4ki", "given": "Terho", "initials": "T"}, {"family": "Strachan", "given": "David P", "initials": "DP"}, {"family": "Dupuis", "given": "Jos\u00e9e", "initials": "J"}, {"family": "Morrison", "given": "Alanna C", "initials": "AC"}, {"family": "Hall", "given": "Ian P", "initials": "IP"}, {"family": "Tobin", "given": "Martin D", "initials": "MD"}, {"family": "London", "given": "Stephanie J", "initials": "SJ"}], "type": "journal article", "published": "2018-01-12", "journal": {"volume": "3", "issn": "2398-502X", "issue": null, "pages": "4", "title": "Wellcome Open Res", "issn-l": "2398-502X"}, "abstract": "Background: Over 90 regions of the genome have been associated with lung function to date, many of which have also been implicated in chronic obstructive pulmonary disease. Methods: We carried out meta-analyses of exome array data and three lung function measures: forced expiratory volume in one second (FEV 1), forced vital capacity (FVC) and the ratio of FEV 1 to FVC (FEV 1/FVC). These analyses by the SpiroMeta and CHARGE consortia included 60,749 individuals of European ancestry from 23 studies, and 7,721 individuals of African Ancestry from 5 studies in the discovery stage, with follow-up in up to 111,556 independent individuals. Results: We identified significant (P<2\u00b78x10 -7) associations with six SNPs: a nonsynonymous variant in RPAP1, which is predicted to be damaging, three intronic SNPs ( SEC24C, CASC17 and UQCC1) and two intergenic SNPs near to LY86 and FGF10. Expression quantitative trait loci analyses found evidence for regulation of gene expression at three signals and implicated several genes, including TYRO3 and PLAU. Conclusions: Further interrogation of these loci could provide greater understanding of the determinants of lung function and pulmonary disease.", "doi": "10.12688/wellcomeopenres.12583.3", "pmid": "30175238", "labels": {"National Genomics Infrastructure": "Service", "NGI Uppsala (SNP&SEQ Technology Platform)": "Service"}, "xrefs": [{"db": "pmc", "key": "PMC6081985"}], "notes": [], "created": "2019-01-09T07:22:16.762Z", "modified": "2020-01-21T13:56:13.690Z"}], "created": "2019-01-09T07:22:16.775Z", "modified": "2020-11-27T13:14:10.156Z"}