{"entity": "journal", "iuid": "8ea0b047eca0440dbcfe0410dedbaba1", "timestamp": "2026-07-13T03:48:49.849Z", "links": {"self": {"href": "https://publications.scilifelab.se/journal/Emerg.%20Infect.%20Dis..json"}, "display": {"href": "https://publications.scilifelab.se/journal/Emerg.%20Infect.%20Dis."}}, "title": "Emerg. Infect. Dis.", "issn": "1080-6059", "issn-l": "1080-6040", "publications_count": 3, "publications": [{"entity": "publication", "iuid": "8d47fa9c1fef4abb9764b951e1a6dc25", "links": {"self": {"href": "https://publications.scilifelab.se/publication/8d47fa9c1fef4abb9764b951e1a6dc25.json"}, "display": {"href": "https://publications.scilifelab.se/publication/8d47fa9c1fef4abb9764b951e1a6dc25"}}, "title": "Nephropathia Epidemica Caused by Puumala Virus in Bank Voles, Scania, Southern Sweden.", "authors": [{"family": "Ling", "given": "Jiaxin", "initials": "J"}, {"family": "Lundeberg", "given": "Elin Economou", "initials": "EE"}, {"family": "Wasberg", "given": "Anishia", "initials": "A"}, {"family": "Faria", "given": "In\u00eas R", "initials": "IR"}, {"family": "Vucicevic", "given": "Sanja", "initials": "S"}, {"family": "Settergren", "given": "Bo", "initials": "B"}, {"family": "Lundkvist", "given": "\u00c5ke", "initials": "\u00c5"}], "type": "journal article", "published": "2024-04-00", "journal": {"title": "Emerg. Infect. Dis.", "issn": "1080-6059", "volume": "30", "issue": "4", "pages": "732-737", "issn-l": "1080-6040"}, "abstract": "In 2018, a local case of nephropathia epidemica was reported in Scania, southern Sweden, more than 500 km south of the previously known presence of human hantavirus infections in Sweden. Another case emerged in the same area in 2020. To investigate the zoonotic origin of those cases, we trapped rodents in Ballingsl\u00f6v, Norra Sandby, and S\u00f6rby in southern Sweden during 2020\u20122021. We found Puumala virus (PUUV) in lung tissues from 9 of 74 Myodes glareolus bank voles by screening tissues using a hantavirus pan-large segment reverse transcription PCR. Genetic analysis revealed that the PUUV strains were distinct from those found in northern Sweden and Denmark and belonged to the Finnish PUUV lineage. Our findings suggest an introduction of PUUV from Finland or Karelia, causing the human PUUV infections in Scania. This discovery emphasizes the need to understand the evolution, cross-species transmission, and disease outcomes of this newly found PUUV variant.", "doi": "10.3201/eid3004.231414", "pmid": "38526134", "labels": {"Bioinformatics Support for Computational Resources": "Service"}, "xrefs": [{"db": "pmc", "key": "PMC10977816"}], "notes": [], "created": "2024-11-25T10:32:53.491Z", "modified": "2025-02-28T14:24:01.582Z"}, {"entity": "publication", "iuid": "dc5ca47aafbe40018e69f95890ca6181", "links": {"self": {"href": "https://publications.scilifelab.se/publication/dc5ca47aafbe40018e69f95890ca6181.json"}, "display": {"href": "https://publications.scilifelab.se/publication/dc5ca47aafbe40018e69f95890ca6181"}}, "title": "Genomic Epidemiology of Azithromycin-Nonsusceptible Neisseria gonorrhoeae, Argentina, 2005-2019.", "authors": [{"family": "Gianecini", "given": "Ricardo Ariel", "initials": "RA"}, {"family": "Poklepovich", "given": "Tomas", "initials": "T"}, {"family": "Golparian", "given": "Daniel", "initials": "D"}, {"family": "Cuenca", "given": "Noelia", "initials": "N"}, {"family": "Tuduri", "given": "Ezequiel", "initials": "E"}, {"family": "Unemo", "given": "Magnus", "initials": "M"}, {"family": "Campos", "given": "Josefina", "initials": "J"}, {"family": "Galarza", "given": "Patricia", "initials": "P"}, {"family": "Gonococcal Antimicrobial Susceptibility Surveillance Programme\u2014Argentina1", "given": "", "initials": ""}], "type": "journal article", "published": "2021-08-24", "journal": {"title": "Emerg. Infect. Dis.", "issn": "1080-6059", "issn-l": "1080-6040", "volume": "27", "issue": "9", "pages": "2369-2378"}, "abstract": "Azithromycin-nonsusceptible Neisseria gonorrhoeae strains are an emerging global public health threat. During 2015-2018, the prevalence of azithromycin-nonsusceptible gonococcal infection increased significantly in Argentina. To investigate the genomic epidemiology and resistance mechanisms of these strains, we sequenced 96 nonsusceptible isolates collected in Argentina during 2005-2019. Phylogenomic analysis revealed 2 main clades, which were characterized by a limited geographic distribution, circulating during January 2015-November 2019. These clades included the internationally spreading multilocus sequence types (STs) 1580 and 9363. The ST1580 isolates, which had MICs of 2-4 \u03bcg/mL, had mutations in the 23S rRNA. The ST9363 isolates, which had MICs of 2-4 or >256 \u03bcg/mL, had mutations in the 23S rRNA, a mosaic mtr locus, or both. Identifying the geographic dissemination and characteristics of these predominant clones will guide public health policies to control the spread of azithromycin-nonsusceptible N. gonorrhoeae in Argentina.", "doi": "10.3201/eid2709.204843", "pmid": "34424175", "labels": {"Clinical Genomics \u00d6rebro": "Collaborative", "Clinical Genomics": "Collaborative"}, "xrefs": [{"db": "pmc", "key": "PMC8386799"}], "notes": [], "created": "2021-12-08T10:02:40.536Z", "modified": "2021-12-08T12:26:38.448Z"}, {"entity": "publication", "iuid": "fcc3450672a04634ba6dc161936d5eb1", "links": {"self": {"href": "https://publications.scilifelab.se/publication/fcc3450672a04634ba6dc161936d5eb1.json"}, "display": {"href": "https://publications.scilifelab.se/publication/fcc3450672a04634ba6dc161936d5eb1"}}, "title": "Rapid Increase in Carriage Rates of Enterobacteriaceae Producing Extended-Spectrum \u03b2-Lactamases in Healthy Preschool Children, Sweden", "authors": [{"family": "Kaarme", "given": "Johan", "initials": "J"}, {"family": "Riedel", "given": "Hilde", "initials": "H"}, {"family": "Schaal", "given": "Wesley", "initials": "W"}, {"family": "Yin", "given": "Hong", "initials": "H"}, {"family": "Nev\u00e9us", "given": "Tryggve", "initials": "T"}, {"family": "Melhus", "given": "\u00c5sa", "initials": "\u00c5"}], "type": "journal-article", "published": "2018-10-00", "journal": {"volume": "24", "issn": "1080-6040", "issue": "10", "pages": "1874-1881", "title": "Emerg. Infect. Dis.", "issn-l": null}, "abstract": null, "doi": "10.3201/eid2410.171842", "pmid": "30226162", "labels": {"National Genomics Infrastructure": "Service", "NGI Uppsala (Uppsala Genome Center)": "Service"}, "xrefs": [], "notes": [], "created": "2018-10-15T09:46:41.620Z", "modified": "2020-01-21T13:56:12.140Z"}], "created": "2018-10-15T09:46:41.628Z", "modified": "2020-11-27T13:14:00.941Z"}